CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
peroxisome 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40460	Soybean	cytosol	45.45	91.19
KRH65048	Soybean	cytosol, nucleus, peroxisome	77.43	77.43
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	68.03	66.16
PGSC0003DMT400000488	Potato	cytosol	66.14	65.73
GSMUA_Achr1P03100_001	Banana	cytosol	62.38	62.58
Bra019310.1-P	Field mustard	cytosol	35.42	61.08
Solyc01g094590.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	40.44	59.45
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	57.05	56.17
CDY10932	Canola	cytosol, nucleus, peroxisome	57.05	56.0
CDX94181	Canola	cytosol, nucleus, peroxisome	56.43	55.38
KRH57481	Soybean	cytosol	8.78	37.33
KRH29245	Soybean	cytosol	27.9	26.33
KRH57748	Soybean	cytosol, nucleus, peroxisome	26.33	25.77
KRH27598	Soybean	cytosol, nucleus, peroxisome	27.27	25.66
KRH27095	Soybean	cytosol, nucleus, peroxisome	26.96	25.44
KRH22245	Soybean	cytosol, nucleus, peroxisome	25.39	25.39
KRH27091	Soybean	cytosol	25.71	25.39
KRH22241	Soybean	cytosol, nucleus, peroxisome	26.02	24.63
KRH30278	Soybean	cytosol	26.96	24.23
KRG98268	Soybean	cytosol	26.65	23.94
KRH04670	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.71	23.7
KRH04189	Soybean	cytosol, nucleus, peroxisome	25.71	23.56
KRG91226	Soybean	cytosol, nucleus, peroxisome	26.96	23.5
KRH24233	Soybean	endoplasmic reticulum, golgi, vacuole	27.59	21.73

Protein Annotations

EntrezGene:100812108	Gene3D:2.60.120.330	MapMan:50.1.13	EMBL:ACUP02006038	EMBL:BT097875	UniProt:C6TJM7
InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_09G259600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	EnsemblPlants:KRH40458	ProteinID:KRH40458	ProteinID:KRH40458.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF212	SUPFAM:SSF51197	UniParc:UPI0001B167CF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47827229..47828898

Molecular Weight (calculated)

36287.3 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.297

Length

319 amino acids

Sequence
(BLAST)

001: MSNTKSHAGI PILDLSQPLQ PCSLSSLYNA SKDWGLFHII NHGISKDLCS QIQTLSKHLF NLPSNTKLRL GPLSSLNSYT PLFIASPFFE SLRVNGPNFY
101: VSADNSAEIL FDKKDSKFSV IIQEYCSKME DLSKKILKLV LMSIGDGIEK KFYDSEFKKC HGYLRVNNYS APEVIEDQVE GLGMHTDMSC ITILYQDEIG
201: GLQVRSNEGE WIDINPSEGT LVVNIGDMLQ AWSNDKLRSS EHRVVLKHHE NRFSLSFFWC FEDDKVILAP DEVVGEGNKR KYKPFVCLDY LKFRESNERG
301: RFDKVGFTVR DFASIKAQL

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.