Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g021210.1.1 | Tomato | cytosol, extracellular, plastid | 37.72 | 45.26 |
| Solyc01g017370.1.1 | Tomato | cytosol | 22.81 | 15.76 |
| Solyc08g028950.1.1 | Tomato | nucleus | 16.67 | 10.11 |
| HORVU0Hr1G033870.1 | Barley | nucleus | 3.51 | 4.88 |
| HORVU4Hr1G071640.1 | Barley | nucleus | 0.88 | 1.69 |
| HORVU0Hr1G033880.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 0.0 | 0.0 |
| HORVU0Hr1G034190.1 | Barley | cytoskeleton, cytosol, nucleus | 0.0 | 0.0 |
| Solyc01g017380.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc01g017390.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc01g017460.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 0.0 | 0.0 |
| Solyc01g017470.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc07g021220.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc10g031560.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc12g062580.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc07g039230.1.1 | EnsemblPlantsGene:Solyc07g039230.1 | GO:GO:0000428 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032774 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 |
| SUPFAM:SSF64484 | UniParc:UPI000276B428 | UniProt:K4CDP9 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7:+:46168359..46168775
Molecular Weight (calculated)
12887.7 Da
IEP (calculated)
4.235
GRAVY (calculated)
-0.008
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MAILYYEISI GVGPIREQLA DLDSQIIIEN SLVESEELGE QGNKGNEWED QKVVRGKEFL VRHVELAKQF ILTNIEPERI DLFLLPVLPP ELRSIIQIDG
101: GKLKPICGSV YIDV
101: GKLKPICGSV YIDV
001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
Arabidopsis Description
RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.