Factsheet for Solyc01g017470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	Solyc06g065380.2.1	AT4G09570.1	19130088
ATCG00180.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017390.1.1	Tomato	mitochondrion	30.5	70.49
Solyc10g031560.1.1	Tomato	nucleus	43.26	53.98
Solyc07g021220.1.1	Tomato	cytosol	41.84	35.12
Solyc12g062580.1.1	Tomato	cytosol	33.33	27.98
HORVU3Hr1G023530.1	Barley	cytosol	60.99	27.3
HORVU3Hr1G023450.1	Barley	cytosol	60.99	27.04
PGSC0003DMT400076161	Potato	cytosol	75.18	25.36
Solyc08g028950.1.1	Tomato	nucleus	33.33	25.0
ATCG00180.1	Thale cress	cytosol, mitochondrion	71.63	14.85
CAA33987	Rice	cytosol	66.67	13.78
AGP50746	Barley	cytosol	65.96	13.64
GRMZM5G899366_P01	Maize	plastid	65.96	13.62
Zm00001d036307_P001	Maize	nucleus	60.28	7.54
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
Solyc07g039230.1.1	Tomato	cytosol	0.0	0.0
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	0.0	0.0
Solyc01g017380.1.1	Tomato	cytosol	0.0	0.0
Solyc01g017370.1.1	Tomato	cytosol	0.0	0.0
KRH75289	Soybean	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:2.40.40.70	MapMan:35.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
UniProt:K4AUS8	PFAM:PF00623	PFAM:PF04983	PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_3
InterPro:RNA_pol_asu	SMART:SM00663	SUPFAM:SSF64484	EnsemblPlantsGene:Solyc01g017470.1	EnsemblPlants:Solyc01g017470.1.1	UniParc:UPI0002762B1B

Description

No Description!

Coordinates

chr1:+:23953063..23953488

Molecular Weight (calculated)

16140.7 Da

IEP (calculated)

8.297

GRAVY (calculated)

-0.067

Length

141 amino acids

Sequence
(BLAST)

001: MQGHPIFLNR EPTLHRLGIK AFQPVSVEGC AIYLYPLVCK GFNYDFDGDQ MAGLVPLSLG AQLEARLLMF SHMNLLSPAI GDPIFVPMQD MLIGLYVLTN
101: GNHRGICVNR YNPCNRKYYL NQKGSYNSYY KYTKEPFFDF L

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.