Factsheet for Solyc01g017460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	Solyc06g065380.2.1	AT4G09570.1	19130088
ATCG00180.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75289	Soybean	cytosol	86.27	61.97
Solyc01g017380.1.1	Tomato	cytosol	82.35	49.41
Solyc08g028950.1.1	Tomato	nucleus	52.94	14.36
HORVU3Hr1G023530.1	Barley	cytosol	78.43	12.7
HORVU3Hr1G023450.1	Barley	cytosol	78.43	12.58
PGSC0003DMT400076161	Potato	cytosol	88.24	10.77
Solyc07g021220.1.1	Tomato	cytosol	31.37	9.52
Solyc12g062580.1.1	Tomato	cytosol	29.41	8.93
ATCG00180.1	Thale cress	cytosol, mitochondrion	88.24	6.62
CAA33987	Rice	cytosol	82.35	6.16
AGP50746	Barley	cytosol	82.35	6.16
GRMZM5G899366_P01	Maize	plastid	82.35	6.15
Zm00001d036307_P001	Maize	nucleus	82.35	3.72
Solyc01g017370.1.1	Tomato	cytosol	3.92	1.21
Solyc01g017390.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017470.1.1	Tomato	mitochondrion	0.0	0.0
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
Solyc07g039230.1.1	Tomato	cytosol	0.0	0.0
Solyc10g031560.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g017460.1.1	EnsemblPlantsGene:Solyc01g017460.1	Gene3D:2.40.40.20	PANTHER:PTHR19376	SUPFAM:SSF64484	UniParc:UPI0002762B1A
UniProt:K4AUS7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:23952762..23952917

Molecular Weight (calculated)

5826.0 Da

IEP (calculated)

10.235

GRAVY (calculated)

-0.645

Length

51 amino acids

Sequence
(BLAST)

1: MRDGHNKIYK SFSDVIEGKE GRFHETLLGK RVDYSRRSVI VVGPSISSNR C

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.