Factsheet for PGSC0003DMT400076161

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	PGSC0003DMT400002331	AT4G09570.1	19130088
ATCG00180.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g028950.1.1	Tomato	nucleus	41.15	91.49
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	10.77	88.24
KRH75289	Soybean	cytosol	13.4	78.87
Solyc01g017470.1.1	Tomato	mitochondrion	25.36	75.18
HORVU3Hr1G023530.1	Barley	cytosol	56.46	74.92
HORVU3Hr1G023450.1	Barley	cytosol	56.46	74.21
Solyc12g062580.1.1	Tomato	cytosol	22.73	56.55
ATCG00180.1	Thale cress	cytosol, mitochondrion	90.43	55.59
CAA33987	Rice	cytosol	77.99	47.8
GRMZM5G899366_P01	Maize	plastid	77.99	47.73
AGP50746	Barley	cytosol	75.12	46.04
Zm00001d036307_P001	Maize	nucleus	63.64	23.58

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:1.10.40.90	MapMan:15.6.1.2.1.3	Gene3D:2.40.40.20
EntrezGene:4099931	wikigene:4099931	ProteinID:ABB90034	ProteinID:ABB90034.1	ProteinID:ABD47048	ProteinID:ABD47048.1
ProteinID:AEB72130	ProteinID:AEB72130.1	ProteinID:AEB72216	ProteinID:AEB72216.1	EMBL:DQ231562	EMBL:DQ386163
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EMBL:JF772170	EMBL:JF772171	UniProt:M1CW95
PFAM:PF00623	PFAM:PF04983	PFAM:PF04997	EnsemblPlantsGene:PGSC0003DMG402029613	PGSC:PGSC0003DMG402029613	EnsemblPlants:PGSC0003DMT400076161
PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_asu	SMART:SM00663
SUPFAM:SSF64484	UniParc:UPI0002964BF9	EntrezGene:rpoC1	wikigene:rpoC1	SEG:seg	:

Description

DNA-directed RNA polymerase subunit beta' [Source:PGSC_GENE;Acc:PGSC0003DMG402029613]

Coordinates

chr9:+:58178028..58180390

Molecular Weight (calculated)

47833.3 Da

IEP (calculated)

9.285

GRAVY (calculated)

-0.175

Length

418 amino acids

Sequence
(BLAST)

001: MVLCLLPVLP PELRPIIQID GGKLMSSDIN ELYRRVIYRN NTLTDLLTTS RSTPGELVMC QEKLVQEAVD TLLDNGIRGQ PMRDGHNKVY KSFSDVIEGK
101: EGRFRETLLG KRVDYSGRSV IVVGPSLSLH RCGLPREIAI ELFQTFVIRG LIRQHLASNI GVAKSKIREK EPIVWEILQE VMQGHPVLLN RAPTLHRLGI
201: QAFQPVLVEG RAICLHPLVC KGFNADFDGD QMAVHVPLSL EAQVEARLLM FSHMNLLSPA IGDPISVPTQ DMLIGLYVLT SGNHRGICVN RYNPCNRRNY
301: QNQKRSDNSY YKYTKEPFFS NSYDAIGAYR QKRINLDSPL WLRWRLDQRV IASRETPIEV HYESLGTFYE IYGHYLIVRS LKKKILFIYI RTTVGHIVLY
401: REIEEAIQGF SRAYSYAT

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.