Factsheet for GRMZM5G899366_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	Zm00001d004812_P002	AT4G09570.1	19130088
ATCG00180.1	Zm00001d023560_P002	AT4G09570.1	19130088
ATCG00180.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33987	Rice	cytosol	96.34	96.48
HORVU3Hr1G023530.1	Barley	cytosol	43.92	95.24
HORVU3Hr1G023450.1	Barley	cytosol	43.92	94.34
AGP50746	Barley	cytosol	92.24	92.38
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	6.15	82.35
ATCG00180.1	Thale cress	cytosol, mitochondrion	78.62	78.97
PGSC0003DMT400076161	Potato	cytosol	47.73	77.99
Solyc08g028950.1.1	Tomato	nucleus	20.94	76.06
KRH75289	Soybean	cytosol	7.47	71.83
Solyc01g017470.1.1	Tomato	mitochondrion	13.62	65.96
Solyc12g062580.1.1	Tomato	cytosol	11.42	46.43
Zm00001d036307_P001	Maize	nucleus	61.2	37.06

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:1.10.40.90	MapMan:15.6.1.2.1.3	Gene3D:2.40.40.20
EntrezGene:845226	ProteinID:AAA84488.1	ProteinID:CAA35196.1	ProteinID:CAA60277.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
EnsemblPlantsGene:GRMZM5G899366	EnsemblPlants:GRMZM5G899366_P01	EnsemblPlants:GRMZM5G899366_T01	HAMAP:MF_01323	UniProt:P16024	PFAM:PF00623
PFAM:PF04983	PFAM:PF04997	PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3
InterPro:RNA_pol_asu	InterPro:RNApol_RpoC1	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI0000134726	SEG:seg

Description

rpoC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P16024]

Coordinates

chrPt:+:24733..26784

Molecular Weight (calculated)

78327.0 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.314

Length

683 amino acids

Sequence
(BLAST)

001: MIDQYKHKQL QIGLVSPQQI KAWAKKILPN GEVVGEVTRP STFHYKTDKP EKDGLFCERI FGPIKSGICA CGNSRASVRE NEDERFCQKC GVEFVDSRIR
101: RYQMGYIKLA CPVTHVWYLK GLPSYIANLL DKPLKKLEGL VYGDFSFARP SAKKPTFLRL RGLFEDEISS CNHSISPFFS TPGFATFRNR EIATGAGAIR
201: EQLADLDLRI IIENSLVEWK ELEDEGYSGD EWEDRKRRIR KVFLIRRMQL AKHFIQTNVE PEWMVLCLLP VLPPELRPIV YRSGDKVVTS DINELYKRVI
301: RRNNNLAYLL KRSELAPADL VMCQEKLVQE AVDTLLDSGS RGQPTRDGHN KVYKSLSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHQCGLPLE
401: IAIKLFQLFV IRDLITKRAT SNVRIAKRKI WEKEPIVWEI LQEVMRGHPV LLNRAPTLHR LGIQAFQPTL VEGRTICLHP LVCKGFNADF DGDQMAVHLP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPICV PTQDMLIGLY VLTIGNRLGI CANRYNSCGN SPNKKVNYNN NNYYKYTKDK EPHFSSSYDA LGAYRQKRIG
601: LNSPLWLRWK LDQRIVGSRE VPIEVQYESF GTYHEIYAHY LVVGNRKKEI RSIYIRTTLG HISFYREIEE AIQGFSRAYS YTI

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.