CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	KRG91803	AT4G09570.1	19130088
ATCG00180.1	KRH34983	AT4G09570.1	19130088
ATCG00180.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	61.97	86.27
HORVU3Hr1G023530.1	Barley	cytosol	69.01	15.56
HORVU3Hr1G023450.1	Barley	cytosol	69.01	15.41
PGSC0003DMT400076161	Potato	cytosol	78.87	13.4
Solyc08g028950.1.1	Tomato	nucleus	35.21	13.3
Solyc12g062580.1.1	Tomato	cytosol	21.13	8.93
ATCG00180.1	Thale cress	cytosol, mitochondrion	78.87	8.24
AGP50746	Barley	cytosol	71.83	7.48
CAA33987	Rice	cytosol	71.83	7.48
GRMZM5G899366_P01	Maize	plastid	71.83	7.47
Zm00001d036307_P001	Maize	nucleus	71.83	4.52
Solyc01g017470.1.1	Tomato	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.40.20	MapMan:35.1	EMBL:ACUP02000281	EnsemblPlantsGene:GLYMA_01G076000
GO:GO:0000428	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	UniProt:K7K2H9	EnsemblPlants:KRH75289	ProteinID:KRH75289
ProteinID:KRH75289.1	PFAM:PF00623	PANTHER:PTHR19376	InterPro:RNA_pol_asu	SUPFAM:SSF64484	UniParc:UPI0002959D3F

Description

hypothetical protein

Coordinates

chr1:+:17211826..17212063

Molecular Weight (calculated)

8072.9 Da

IEP (calculated)

9.830

GRAVY (calculated)

-0.130

Length

71 amino acids

Sequence
(BLAST)

1: MRDVHNKVYK SFSDIIEGKE GRFHETLLGK RVDYSGRSVI VVGPSVSLHR CGLPREIAIE LFQTFLIRGV N

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.