Factsheet for Solyc12g062580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	Solyc06g065380.2.1	AT4G09570.1	19130088
ATCG00180.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g021220.1.1	Tomato	cytosol	68.45	68.45
Solyc01g017390.1.1	Tomato	mitochondrion	14.29	39.34
Solyc01g017380.1.1	Tomato	cytosol	17.86	35.29
Solyc01g017470.1.1	Tomato	mitochondrion	27.98	33.33
Solyc10g031560.1.1	Tomato	nucleus	20.83	30.97
Solyc08g028950.1.1	Tomato	nucleus	33.33	29.79
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	8.93	29.41
HORVU3Hr1G023530.1	Barley	cytosol	44.05	23.49
HORVU3Hr1G023450.1	Barley	cytosol	44.05	23.27
PGSC0003DMT400076161	Potato	cytosol	56.55	22.73
KRH75289	Soybean	cytosol	8.93	21.13
ATCG00180.1	Thale cress	cytosol, mitochondrion	54.17	13.38
CAA33987	Rice	cytosol	47.62	11.73
GRMZM5G899366_P01	Maize	plastid	46.43	11.42
AGP50746	Barley	cytosol	45.83	11.29
Zm00001d036307_P001	Maize	nucleus	44.64	6.65
Solyc01g017370.1.1	Tomato	cytosol	1.19	1.21
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
Solyc07g039230.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc12g062580.1.1	EnsemblPlantsGene:Solyc12g062580.1	Gene3D:2.40.40.20	SUPFAM:SSF64484	UniParc:UPI000276A388	UniProt:K4DG84
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:33824789..33825568

Molecular Weight (calculated)

19480.6 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.246

Length

168 amino acids

Sequence
(BLAST)

001: MCREKLVQQV VDTLHDNGIQ GQPMRDGYNK VHKSFSYVIE GKKKNFVRLY LVNESIIEDI LSLSWVLHFH YIYVDCIVKL GAICVHPLVY KGFNADFGGD
101: QIHIYLSLEA QVEAHLLIMF SHINSMSLMS GNHRGICVNG YNPCNRRNYQ NQNKSENSYY KYAKKPFL

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.