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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • nucleus 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GRMZM5G899366_P01 Maize plastid 96.48 96.34
HORVU3Hr1G023530.1 Barley cytosol 44.13 95.56
HORVU3Hr1G023450.1 Barley cytosol 44.13 94.65
AGP50746 Barley cytosol 93.26 93.26
Solyc01g017460.1.1 Tomato cytosol, endoplasmic reticulum, nucleus 6.16 82.35
ATCG00180.1 Thale cress cytosol, mitochondrion 78.59 78.82
PGSC0003DMT400076161 Potato cytosol 47.8 77.99
Solyc08g028950.1.1 Tomato nucleus 20.97 76.06
KRH75289 Soybean cytosol 7.48 71.83
Solyc01g017470.1.1 Tomato mitochondrion 13.78 66.67
Solyc12g062580.1.1 Tomato cytosol 11.73 47.62
Zm00001d036307_P001 Maize nucleus 60.41 36.52
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.10.274.100Gene3D:1.10.40.90MapMan:15.6.1.2.1.3Gene3D:2.40.40.20
EntrezGene:3131433UniProt:A0A0K0LR88ProteinID:AAS46112.1ProteinID:AJC99304.1ProteinID:AJC99393.1EnsemblPlants:CAA33987
EnsemblPlantsGene:CAA33987ProteinID:CAA33987ProteinID:CAA33987.1GO:GO:0000428GO:GO:0001054GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005665GO:GO:0005730
GO:GO:0005736GO:GO:0005737GO:GO:0005739GO:GO:0005773GO:GO:0006139GO:GO:0006351
GO:GO:0006360GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009506GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0016740GO:GO:0016779HAMAP:MF_01323RefSeq:NP_039374.1
UniProt:P0C506PFAM:PF00623PFAM:PF04983PFAM:PF04997PANTHER:PTHR19376InterPro:RNA_pol_N
InterPro:RNA_pol_Rpb1_1InterPro:RNA_pol_Rpb1_3InterPro:RNA_pol_asuInterPro:RNApol_RpoC1SMART:SM00663SUPFAM:SSF64484
UniParc:UPI0000134732SEG:seg::::
Description
rpoC1RNA polymerase beta' subunit-1
Coordinates
chrPt:+:22479..24527
Molecular Weight (calculated)
78134.6 Da
IEP (calculated)
9.109
GRAVY (calculated)
-0.321
Length
682 amino acids
Sequence
(BLAST)
001: MIDQYKHQQL QIGLVSPQQI KAWANKTLPN GEVVGEVTRP STFHYKTDKP EKDGLFCERI FGPIKSRICA CGNSRASGAE NEDERFCQKC GVEFVDSRIR
101: RYQMGYIKLA CPVTHVWYLK GLPSYIANLL DKPLKKLEGL VYGDFSFARP SAKKPTFLRL RGLFEDEISS CNHSISPFFS TPGFTTFRNR EIATGAGAIR
201: EQLADLDLRI ILENSSVEWK ELEDEGYSGD EWEDRKRRIR KVFLIRRMQL AKHFIQTNVE PEWMVLCLLP VLPPELRPIV YRSGDKVVTS DINELYKRVI
301: RRNNNLAYLL KRSELAPADL VMCQEKLVQE AVDTLLDSGS RGQPTRDGHN KVYKSLSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHQCGLPLE
401: IAIKLFQLFV IRDLITKRAT SNVRIAKRKI WEKEPIVWEI LQEVMRGHPV LLNRAPTLHR LGIQAFQPTL VEGRTICLHP LVCKGFNADF DGDQMAVHLP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPICV PTQDMLIGLY VLTIGNRRGI CANRYNSCGN YPNQKVNYNN NNPKYTKDKE SLFSSSYDAL GAYRQKQICL
601: DSPLWLRWKL DQRVIGLREV PIEVQYESLG TYREIYAHYL VVGNRKKEIR SIYIRTTLGH ISFYREIEEA IQGFSQAYSY TI
Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)
001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
Arabidopsis Description
RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.