Factsheet for HORVU3Hr1G023450.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	HORVU4Hr1G019530.1	AT4G09570.1	19130088
ATCG00180.1	HORVU5Hr1G032550.3	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G023530.1	Barley	cytosol	98.43	99.37
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	12.58	78.43
Solyc08g028950.1.1	Tomato	nucleus	43.08	72.87
KRH75289	Soybean	cytosol	15.41	69.01
Solyc01g017470.1.1	Tomato	mitochondrion	27.04	60.99
PGSC0003DMT400076161	Potato	cytosol	74.21	56.46
AGP50746	Barley	cytosol	95.91	44.72
CAA33987	Rice	cytosol	94.65	44.13
Solyc12g062580.1.1	Tomato	cytosol	23.27	44.05
GRMZM5G899366_P01	Maize	plastid	94.34	43.92
ATCG00180.1	Thale cress	cytosol, mitochondrion	78.62	36.76
Zm00001d036307_P001	Maize	nucleus	91.19	25.71
HORVU0Hr1G036780.1	Barley	cytosol	3.77	21.43
HORVU4Hr1G071640.1	Barley	nucleus	3.77	20.34
HORVU0Hr1G033870.1	Barley	nucleus	2.83	10.98
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	5.97	10.05
HORVU0Hr1G034190.1	Barley	cytoskeleton, cytosol, nucleus	5.97	10.05
HORVU3Hr1G092640.2	Barley	cytosol	1.26	5.97
HORVU4Hr1G045370.2	Barley	nucleus	10.38	5.66
AGP50747	Barley	nucleus	15.41	3.32
HORVU6Hr1G049130.7	Barley	nucleus	15.41	3.32
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	0.0	0.0
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G033880.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:1.10.40.90	MapMan:15.6.1.2.1.3	Gene3D:2.40.40.20
UniProt:A0A287KFH6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:HORVU3Hr1G023450	EnsemblPlants:HORVU3Hr1G023450.1	PFAM:PF00623
PFAM:PF04983	PFAM:PF04997	PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3
InterPro:RNA_pol_asu	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI000B470B12	SEG:seg	:

Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287KFH6]

Coordinates

chrchr3H:+:86540144..86542817

Molecular Weight (calculated)

36209.5 Da

IEP (calculated)

9.601

GRAVY (calculated)

-0.112

Length

318 amino acids

Sequence
(BLAST)

001: MQLAKHFIQT NVEPEWMVLC LLPVLPPELR PIVYRSGDKV VTSDINELYK RVIRRNNNLA YLLKRSELAP ADLVMCHEKL VQEAVDTLLD SGSRGQPTRD
101: GHNKVYKSLS DVTEGKERRF RETLLGKRVD YSGRSVIVVG PSLSLHQCGL PLEIAIKLFQ LFVIRDLITK RTTSNVRIAK RKIWENEPIV WEILQEVMRG
201: HPVLLNRAST LHRLGIQAFQ PTLVEGRTIS LHPLVCKGFN ADFDGDQMAV HLPLSLEAQA ETRLLMFSHM NLLSPAIRDP ICVPTQDMLI GLYVLTIGKR
301: RGICANRYNS FRNWVGCQ

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.