Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G049130.7 | Barley | nucleus | 100.0 | 100.0 |
| Solyc01g017390.1.1 | Tomato | mitochondrion | 0.68 | 16.39 |
| HORVU3Hr1G023530.1 | Barley | cytosol | 3.32 | 15.56 |
| HORVU3Hr1G023450.1 | Barley | cytosol | 3.32 | 15.41 |
| HORVU4Hr1G045370.2 | Barley | nucleus | 5.89 | 14.92 |
| Solyc07g021210.1.1 | Tomato | cytosol, extracellular, plastid | 0.88 | 13.68 |
| HORVU4Hr1G071640.1 | Barley | nucleus | 0.47 | 11.86 |
| Solyc01g017380.1.1 | Tomato | cytosol | 0.68 | 11.76 |
| TraesCSU01G252700.1 | Wheat | cytosol | 0.74 | 10.48 |
| AGP50746 | Barley | cytosol | 4.54 | 9.82 |
| HORVU0Hr1G033870.1 | Barley | nucleus | 0.47 | 8.54 |
| HORVU0Hr1G028570.1 | Barley | cytoskeleton, cytosol, nucleus | 1.02 | 7.94 |
| HORVU0Hr1G034190.1 | Barley | cytoskeleton, cytosol, nucleus | 1.02 | 7.94 |
| Solyc01g017370.1.1 | Tomato | cytosol | 0.81 | 7.27 |
| Solyc07g021220.1.1 | Tomato | cytosol | 0.81 | 7.14 |
| HORVU0Hr1G028560.1 | Barley | cytosol, extracellular, nucleus | 0.34 | 5.81 |
| HORVU0Hr1G037280.1 | Barley | cytosol, extracellular, nucleus | 0.34 | 5.81 |
| HORVU0Hr1G036780.1 | Barley | cytosol | 0.2 | 5.36 |
| HORVU3Hr1G092640.2 | Barley | cytosol | 0.2 | 4.48 |
| TraesCS2A01G470300.1 | Wheat | cytosol | 0.2 | 3.66 |
| HORVU0Hr1G036770.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 0.2 | 3.26 |
| HORVU0Hr1G033880.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 0.2 | 3.26 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.1790.20 | Gene3D:1.10.274.100 |
| MapMan:15.6.1.2.1.4 | EntrezGene:4525122 | EnsemblPlants:AGP50747 | EnsemblPlantsGene:AGP50747 | ProteinID:AGP50747 | ProteinID:AGP50747.1 |
| ProteinID:AMA20238.1 | ncoils:Coil | InterPro:DNA-dir_RpoC2_beta_pp | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 |
| ENA:KC912687.1:CDS:25070..29503 | HAMAP:MF_01324 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF42 |
| InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:Rpb1_funnel_sf | GO:S4Z0D4 | UniProt:S4Z0D4 | SUPFAM:SSF64484 |
| TIGRFAMs:TIGR02388 | UniParc:UPI0000E8A890 | RefSeq:YP_874645.1 | SEG:seg | : | : |
Description
rpoC2RNA polymerase beta' subunit
Coordinates
chrPt:+:25070..29503
Molecular Weight (calculated)
169672.0 Da
IEP (calculated)
6.987
GRAVY (calculated)
-0.494
Length
1477 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAERANLVFH NKEIDGTGMK RLISRLIDHF GMGYTSHILD QLKTLGFYQA TTTSISLGIE DLLTIPSKGW LVQDAEQQSF LLEKHYYYGA VHAVEKLRQS
0101: VEIWYATSEY LKQEMNSNFR ITDPSNPVYL MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTADAG
0201: YLTRRLVEVV QHIIVRRRDC GTIRGISVSP QNGMTEKLFV QTLIGRVLAD DIYIGSRCIA ARNQDIGIGL VNRFITAFRA QPFRAQPIYI RTPFTCRSTS
0301: WICQLCYGRS PTHSDLVELG EAVGIIAGQS IGEPGTQLTL RTFHTGGVFT GGTADLVRSP SNGKIQFNEN LVHPTRTRHG QPAFLCYIDL HVTIQSQDIL
0401: YSVNIPSKSL ILVQNDQYVK SEQVIAEIRA GTSTLHFKER VQKHIYSESD GEMHWSTDVY HAPEYQYGNL RRLPKTSHLW ILSVSMCRSS IASFSLHKDQ
0501: DQMNTYGKKD REILDYSTSD RIMSNGHWNL IYPSIFQDNS DLLAKKRRNR FVIPLQYHQE QEKELISCFG ISIEIPFMGV LRRNTIFAYF DDPRYRKDKK
0601: GSGIVKFRYR TLEEEYRTRA EDSEEEYETL EHEYRTREDE YETLEESKYG ILEDEYEYET LENEYGSPEN KYGNPENEYR TLEKDSEEEY GNPESKYRTQ
0701: EDEYGTLEED SEDEYGSPGE SGEEKYGTLE EDSEEDSEDE YESPEEDSIL KKEGLIEHRG TKEFSLKYQK EVDRFFFILQ ELHILPRSSS LKILDNSIIG
0801: VDTQLTKNTR SGLGGLVRVK RKKSHTELKI FSGDIHFPEE ADKILGGCLI PPERQKKDSK ESKKKKNWVY VQRKKILKSK EKYFVSVRPT VAYEMDEGRN
0901: LATLFPQDLL QEENNLQIRL VNFIYHENSK LTQRIYHTNS QFVRTCLVVN WEQEEKEKAG ASLVEVRAND LIRDFLRIEL VKSTISYTRK RYDRTSGGPT
1001: PHNRLDRANS NSFYSKAKIE SLSQHQEAIG TLLNRNKEYQ SLMILSASNC SRIGLFKNSK HPNAIKEWNP RIPILEIFGP LGAIVASISH FSSSYYLLTH
1101: NKILLKKYLF VDNLKQTFQV LQELKYSLID ENKRISNFDS NIMLDPFLLN CHFVHHDSWE ETLAIIHLGQ FICENVCLFK SHIKKSGQIF SVNMDSFVIR
1201: AAKPYLATTG ATVNGHYGEI LYKGDRLVTF IYEKSRSSDI TQGLPKVEQI FEARSIDSLS PNLERRIEDW NERIPRILGV PWGFLIGAEL TIAQSRISLV
1301: NKIQKVYRSQ GVQIHNRHIE IIIRQVTSKV RVSEDGMSNV FSPGELIGLL RAERAGRALD ESIYYRAILL GITRASLNTQ SFISEASFQE TARVLAKAAL
1401: RGRIDWLKGL KENVVLGGII PVGTGFQKFV HRSPQDKNLY FEIKKKNLFA SEMRDFLFLH TELVSSDSDV TNNFYET
0101: VEIWYATSEY LKQEMNSNFR ITDPSNPVYL MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTADAG
0201: YLTRRLVEVV QHIIVRRRDC GTIRGISVSP QNGMTEKLFV QTLIGRVLAD DIYIGSRCIA ARNQDIGIGL VNRFITAFRA QPFRAQPIYI RTPFTCRSTS
0301: WICQLCYGRS PTHSDLVELG EAVGIIAGQS IGEPGTQLTL RTFHTGGVFT GGTADLVRSP SNGKIQFNEN LVHPTRTRHG QPAFLCYIDL HVTIQSQDIL
0401: YSVNIPSKSL ILVQNDQYVK SEQVIAEIRA GTSTLHFKER VQKHIYSESD GEMHWSTDVY HAPEYQYGNL RRLPKTSHLW ILSVSMCRSS IASFSLHKDQ
0501: DQMNTYGKKD REILDYSTSD RIMSNGHWNL IYPSIFQDNS DLLAKKRRNR FVIPLQYHQE QEKELISCFG ISIEIPFMGV LRRNTIFAYF DDPRYRKDKK
0601: GSGIVKFRYR TLEEEYRTRA EDSEEEYETL EHEYRTREDE YETLEESKYG ILEDEYEYET LENEYGSPEN KYGNPENEYR TLEKDSEEEY GNPESKYRTQ
0701: EDEYGTLEED SEDEYGSPGE SGEEKYGTLE EDSEEDSEDE YESPEEDSIL KKEGLIEHRG TKEFSLKYQK EVDRFFFILQ ELHILPRSSS LKILDNSIIG
0801: VDTQLTKNTR SGLGGLVRVK RKKSHTELKI FSGDIHFPEE ADKILGGCLI PPERQKKDSK ESKKKKNWVY VQRKKILKSK EKYFVSVRPT VAYEMDEGRN
0901: LATLFPQDLL QEENNLQIRL VNFIYHENSK LTQRIYHTNS QFVRTCLVVN WEQEEKEKAG ASLVEVRAND LIRDFLRIEL VKSTISYTRK RYDRTSGGPT
1001: PHNRLDRANS NSFYSKAKIE SLSQHQEAIG TLLNRNKEYQ SLMILSASNC SRIGLFKNSK HPNAIKEWNP RIPILEIFGP LGAIVASISH FSSSYYLLTH
1101: NKILLKKYLF VDNLKQTFQV LQELKYSLID ENKRISNFDS NIMLDPFLLN CHFVHHDSWE ETLAIIHLGQ FICENVCLFK SHIKKSGQIF SVNMDSFVIR
1201: AAKPYLATTG ATVNGHYGEI LYKGDRLVTF IYEKSRSSDI TQGLPKVEQI FEARSIDSLS PNLERRIEDW NERIPRILGV PWGFLIGAEL TIAQSRISLV
1301: NKIQKVYRSQ GVQIHNRHIE IIIRQVTSKV RVSEDGMSNV FSPGELIGLL RAERAGRALD ESIYYRAILL GITRASLNTQ SFISEASFQE TARVLAKAAL
1401: RGRIDWLKGL KENVVLGGII PVGTGFQKFV HRSPQDKNLY FEIKKKNLFA SEMRDFLFLH TELVSSDSDV TNNFYET
0001: MAERANLVFH NKVIDGTAIK RLISRLIDHF GMAYTSHILD QVKTLGFQQA TATSISLGID DLLTIPSKGW LVQDAEQQSW ILEKHHHYGN VHAVEKLRQS
0101: IEIWYATSEY LRQEMNPNFR MTDPFNPVHM MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTSDAG
0201: YLTRRLVEVV QHIVVRRTDC GTIRGISVSP RNKNRMMSER IFIQTLIGRV LADDIYIGSR CVAFRNQDLG IGLVNRLITF GTQSISIRTP FTCRSTSWIC
0301: RLCYGRSPTH GDLVELGEAV GIIAGQSIGE PGTQLTLRTF HTGGVFTGGT AEHVRAPYNG KIKFNEDLVH PTRTRHGHPA FLCYIDLSVI IESEDIIHSV
0401: TIPPKSFLLV QNDQYVESEQ VIAEIREGTY TFHFKERVRK YIYSDSEGEM HWSTDVSHAP EFTYSNVHLL PKTSHLWILS GGSCGSSLIR FSIHKDQDQM
0501: NIPFLSAERK SISSLSVNND QVSQKFFSSD FADPKKLGIY DYSELNGNLG TSHYNLIYSA IFHENSDLLA KRRRNRFLIP FQSIQEQEKE FIPQSGISVE
0601: IPINGIFRRN SIFAFFDDPR YRRKSSGILK YGTLKADSII QKEDMIEYRG VQKIKTKYEM KVDRFFFIPE EVHILPESSA IMVQNYSIIG VDTRLTLNIR
0701: SQVGGLIRVE KKKKRIELKI FSGDIHFPDK TDKISRHSGI LIPPGRGKKN SKESKKFKNW IYVQRITPTK KKFFVLVRPV ATYEIADSIN LATLFPQDLF
0801: REKDNIQLRV FNYILYGNGK PTRGISDTSI QLVRTCLVLN WDKNSSLEEV RAFFVEVSTK GLIQDFIRIG LVKSHISYIR KRNNSPDSGL ISADHMNPFY
0901: SISPKSGILQ QSLRQNHGTI RMFLNRNKES QSLLILSSSN CFRMGPFNHV KHHNVINQSI KKNTLITIKN SSGPLGTATP ISNFYSFLPL LTYNQISLIK
1001: YFQLDNLKYI FQKINSYLID ENGIILNLDP YSNVVLNPFK LNWYFLHQNY HHNYCEETST IISLGQFFCE NVCIAKKEPH LKSGQVLIVQ RDSAVIRSAK
1101: PYLATPGAKV HGHYSEILYE GDTLVTFIYE KSRSGDITQG LPKVEQVLEV RSIDSISLNL EKRIKGWNKC ITRILGIPWG FLIGAELTIV QSRISLVNKI
1201: QKVYRSQGVQ IHNRHIEIIV RQITSKVLVS EEGMSNVFLP GELIGLLRAE RTGRALEEAI CYRAVLLGIT RASLNTQSFI SEASFQETAR VLAKAALRGR
1301: IDWLKGLKEN VVLGGVIPAG TGFNKGLVHC SRQHTNIILE KKTKNLALFE GDMRDILFYH REFCDSSISK SDFSRI
0101: IEIWYATSEY LRQEMNPNFR MTDPFNPVHM MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTSDAG
0201: YLTRRLVEVV QHIVVRRTDC GTIRGISVSP RNKNRMMSER IFIQTLIGRV LADDIYIGSR CVAFRNQDLG IGLVNRLITF GTQSISIRTP FTCRSTSWIC
0301: RLCYGRSPTH GDLVELGEAV GIIAGQSIGE PGTQLTLRTF HTGGVFTGGT AEHVRAPYNG KIKFNEDLVH PTRTRHGHPA FLCYIDLSVI IESEDIIHSV
0401: TIPPKSFLLV QNDQYVESEQ VIAEIREGTY TFHFKERVRK YIYSDSEGEM HWSTDVSHAP EFTYSNVHLL PKTSHLWILS GGSCGSSLIR FSIHKDQDQM
0501: NIPFLSAERK SISSLSVNND QVSQKFFSSD FADPKKLGIY DYSELNGNLG TSHYNLIYSA IFHENSDLLA KRRRNRFLIP FQSIQEQEKE FIPQSGISVE
0601: IPINGIFRRN SIFAFFDDPR YRRKSSGILK YGTLKADSII QKEDMIEYRG VQKIKTKYEM KVDRFFFIPE EVHILPESSA IMVQNYSIIG VDTRLTLNIR
0701: SQVGGLIRVE KKKKRIELKI FSGDIHFPDK TDKISRHSGI LIPPGRGKKN SKESKKFKNW IYVQRITPTK KKFFVLVRPV ATYEIADSIN LATLFPQDLF
0801: REKDNIQLRV FNYILYGNGK PTRGISDTSI QLVRTCLVLN WDKNSSLEEV RAFFVEVSTK GLIQDFIRIG LVKSHISYIR KRNNSPDSGL ISADHMNPFY
0901: SISPKSGILQ QSLRQNHGTI RMFLNRNKES QSLLILSSSN CFRMGPFNHV KHHNVINQSI KKNTLITIKN SSGPLGTATP ISNFYSFLPL LTYNQISLIK
1001: YFQLDNLKYI FQKINSYLID ENGIILNLDP YSNVVLNPFK LNWYFLHQNY HHNYCEETST IISLGQFFCE NVCIAKKEPH LKSGQVLIVQ RDSAVIRSAK
1101: PYLATPGAKV HGHYSEILYE GDTLVTFIYE KSRSGDITQG LPKVEQVLEV RSIDSISLNL EKRIKGWNKC ITRILGIPWG FLIGAELTIV QSRISLVNKI
1201: QKVYRSQGVQ IHNRHIEIIV RQITSKVLVS EEGMSNVFLP GELIGLLRAE RTGRALEEAI CYRAVLLGIT RASLNTQSFI SEASFQETAR VLAKAALRGR
1301: IDWLKGLKEN VVLGGVIPAG TGFNKGLVHC SRQHTNIILE KKTKNLALFE GDMRDILFYH REFCDSSISK SDFSRI
Arabidopsis Description
RPOC2DNA-directed RNA polymerase subunit beta'' [Source:UniProtKB/Swiss-Prot;Acc:P56764]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.