Factsheet for HORVU0Hr1G028570.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G034190.1	Barley	cytoskeleton, cytosol, nucleus	100.0	100.0
HORVU0Hr1G033870.1	Barley	nucleus	11.64	26.83
Solyc01g017390.1.1	Tomato	mitochondrion	4.76	14.75
HORVU0Hr1G036780.1	Barley	cytosol	2.65	8.93
HORVU3Hr1G023530.1	Barley	cytosol	10.05	6.03
HORVU3Hr1G023450.1	Barley	cytosol	10.05	5.97
TraesCSU01G252700.1	Wheat	cytosol	3.17	5.71
Solyc07g021220.1.1	Tomato	cytosol	4.76	5.36
Solyc01g017380.1.1	Tomato	cytosol	1.59	3.53
HORVU4Hr1G071640.1	Barley	nucleus	1.06	3.39
AGP50746	Barley	cytosol	10.58	2.93
HORVU4Hr1G045370.2	Barley	nucleus	6.35	2.06
TraesCS2A01G470300.1	Wheat	cytosol	0.53	1.22
AGP50747	Barley	nucleus	7.94	1.02
HORVU6Hr1G049130.7	Barley	nucleus	7.94	1.02
Solyc01g017370.1.1	Tomato	cytosol	0.53	0.61
HORVU3Hr1G092640.2	Barley	cytosol	0.0	0.0
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	0.0	0.0
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G033880.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.50.150	MapMan:35.1	InterPro:DNA-dir_RNAP_su2_dom	InterPro:DNA-dir_RNA_pol_su2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0032549	EnsemblPlantsGene:HORVU0Hr1G028570	EnsemblPlants:HORVU0Hr1G028570.1	InterPro:IPR014724	UniProt:M0VED7
PFAM:PF00562	ScanProsite:PS01166	PANTHER:PTHR20856	PANTHER:PTHR20856:SF20	InterPro:RNA_pol_RPB2_OB-fold	InterPro:RNA_pol_bsu_CS
SUPFAM:SSF64484	UniParc:UPI0002962BCC	:	:	:	:

Description

DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:M0VED7]

Coordinates

chrchrUn:-:151399002..151399568

Molecular Weight (calculated)

21363.9 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.278

Length

189 amino acids

Sequence
(BLAST)

001: MPWEGYNFED AVLISERLVY EDIYTSFHIR KYEIQTDTTS QGSAEKITKE IPHLEEHLLR NLDKNGVVRL GSWVETGDIL VGKLTPQIAS ESSYIAEAGL
101: LRAIFGLEVS TSKETSLKLP IGGRGRVIDV KWIQRDPLDI MVRVYILQKR EIKVGDKVAG RHGNKGIISK ILPRQDMPYL QDGTPVDMV

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.