Factsheet for Solyc07g021210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g039230.1.1	Tomato	cytosol	45.26	37.72
Solyc08g028950.1.1	Tomato	nucleus	20.0	10.11
HORVU3Hr1G092640.2	Barley	cytosol	3.16	4.48
Solyc01g017370.1.1	Tomato	cytosol	2.11	1.21
HORVU6Hr1G049130.7	Barley	nucleus	13.68	0.88
AGP50747	Barley	nucleus	13.68	0.88
HORVU4Hr1G045370.2	Barley	nucleus	5.26	0.86
Solyc01g017380.1.1	Tomato	cytosol	0.0	0.0
TraesCSU01G252700.1	Wheat	cytosol	0.0	0.0
TraesCS2A01G470300.1	Wheat	cytosol	0.0	0.0
Solyc12g062580.1.1	Tomato	cytosol	0.0	0.0
Solyc10g031560.1.1	Tomato	nucleus	0.0	0.0
Solyc07g021220.1.1	Tomato	cytosol	0.0	0.0
Solyc01g017470.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	0.0	0.0
Solyc01g017390.1.1	Tomato	mitochondrion	0.0	0.0
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	0.0	0.0
HORVU0Hr1G036780.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	0.0	0.0
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc07g021210.1.1	EnsemblPlantsGene:Solyc07g021210.1	GO:GO:0001054	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139
GO:GO:0006360	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
SUPFAM:SSF64484	UniParc:UPI000276C7D2	UniProt:K4CCX9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7:+:16790670..16791044

Molecular Weight (calculated)

10791.2 Da

IEP (calculated)

10.762

GRAVY (calculated)

-0.086

Length

95 amino acids

Sequence
(BLAST)

1: MKSDLGNTSS HFFFTTQGFI TFRNREISTS AGAIREQLED QKVGRGKDFL VRRVESAKHF IRTTIEPGWI VLCLLPVLPL KIRPIIQIDG SKLMS

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.