Factsheet for HORVU0Hr1G028560.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	100.0	100.0
HORVU0Hr1G033880.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	89.53	83.7
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	89.53	83.7
HORVU3Hr1G092640.2	Barley	cytosol	53.49	68.66
TraesCS2A01G470300.1	Wheat	cytosol	55.81	58.54
Solyc01g017370.1.1	Tomato	cytosol	46.51	24.24
AGP50746	Barley	cytosol	100.0	12.61
HORVU4Hr1G045370.2	Barley	nucleus	8.14	1.2
AGP50747	Barley	nucleus	5.81	0.34
HORVU6Hr1G049130.7	Barley	nucleus	5.81	0.34
HORVU3Hr1G023530.1	Barley	cytosol	0.0	0.0
HORVU3Hr1G023450.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G036780.1	Barley	cytosol	0.0	0.0
HORVU4Hr1G071640.1	Barley	nucleus	0.0	0.0
HORVU0Hr1G034190.1	Barley	cytoskeleton, cytosol, nucleus	0.0	0.0
HORVU0Hr1G033870.1	Barley	nucleus	0.0	0.0
Solyc01g017380.1.1	Tomato	cytosol	0.0	0.0
Solyc01g017390.1.1	Tomato	mitochondrion	0.0	0.0
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
Solyc07g021220.1.1	Tomato	cytosol	0.0	0.0
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	0.0	0.0
TraesCSU01G252700.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU0Hr1G028560.1	EnsemblPlantsGene:HORVU0Hr1G028560	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:RNA_pol_Rpb1_1	KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6
PFAM:PF04997	SUPFAM:SSF64484	UniParc:UPI000B487638	UniProt:A0A287E9R1	MapMan:35.1	:

Description

No Description!

Coordinates

chrchrUn:-:151398082..151398339

Molecular Weight (calculated)

9582.3 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.762

Length

86 amino acids

Sequence
(BLAST)

1: MIDQYKHQQL QIGLVSPQQI KAWANKNLPN GEAVGEVTRP STFHYKTDKP EKDGLFCERI FGPIKSGICG CGNSRASGAE NEDERF

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.