Factsheet for HORVU4Hr1G045370.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017370.1.1	Tomato	cytosol	3.43	12.12
Solyc01g017380.1.1	Tomato	cytosol	1.72	11.76
HORVU3Hr1G023530.1	Barley	cytosol	5.66	10.48
HORVU3Hr1G023450.1	Barley	cytosol	5.66	10.38
HORVU0Hr1G033870.1	Barley	nucleus	1.37	9.76
HORVU0Hr1G036780.1	Barley	cytosol	0.86	8.93
AGP50746	Barley	cytosol	9.95	8.5
Solyc01g017390.1.1	Tomato	mitochondrion	0.86	8.2
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	1.2	8.14
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	1.2	8.14
HORVU3Hr1G092640.2	Barley	cytosol	0.86	7.46
Solyc07g021220.1.1	Tomato	cytosol	2.06	7.14
HORVU4Hr1G071640.1	Barley	nucleus	0.69	6.78
TraesCSU01G252700.1	Wheat	cytosol	1.2	6.67
HORVU0Hr1G034190.1	Barley	cytoskeleton, cytosol, nucleus	2.06	6.35
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	2.06	6.35
HORVU6Hr1G049130.7	Barley	nucleus	14.92	5.89
AGP50747	Barley	nucleus	14.92	5.89
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.86	5.43
HORVU0Hr1G033880.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.86	5.43
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.86	5.26
TraesCS2A01G470300.1	Wheat	cytosol	0.51	3.66

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.390	Gene3D:1.10.1790.20	MapMan:15.6.1.2.1.4	UniProt:A0A287NWT2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:HORVU4Hr1G045370	EnsemblPlants:HORVU4Hr1G045370.2	PFAM:PF04998	PANTHER:PTHR19376	PANTHER:PTHR19376:SF42
InterPro:RNA_pol_Rpb1_5	SUPFAM:SSF64484	UniParc:UPI000B47E888	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:361492133..361495641

Molecular Weight (calculated)

66939.6 Da

IEP (calculated)

9.721

GRAVY (calculated)

-0.274

Length

583 amino acids

Sequence
(BLAST)

001: MDEGRNLATL FPQDLLQEEN NLQIRLVNFI YHENSKLTQR IYHTNSQFVR TCLVVNWEQE EKEKAGASLV EVRANDLIRD FLRIELVKST ISYTRKRYDR
101: TSGGPTPHNR LDRANSNSFY SKAKIESLSQ HQEAIGTLLN RNKEYQSLMI LSASNCSRIG LFKNSKHPNA IKEWNPRIPI LEIFGPLGAI VASISHFSSS
201: YYLLTHNKIL LKKYLFVDNL KQTFQVLQEL KYSLIDENKR ISNFDSNIML DPFLLNCHFV HHDSWEETLA IIHLGQFICE NVCLFKSHIK KSGQIFSVNM
301: DSFVIRAAKP YLATTGATVN GHYGEILYKG DRLVSFIYEK ARSSDITQGL PKVEQIFEAR SIDSLSPNLE RRIEDWNERI PRILGVPWGF LIGAELTIAQ
401: SRISLVNKIQ KVYRSQGVQI HNRHIEIIIR QVTSKVRVSE DGMSNVFSPG ELIGLLRAER AGRALDESIY YRAILLGITR ASLNTQRFIF GARFQETARV
501: LAKAALRGRI DWLKGLKENV VLGGIIPVGT GFQKFVHRSP QDKNLYFEIK KKNLFASEMR DFLFLHTELV SSDSDVTNNF YET

Best Arabidopsis Sequence Match ( ATCG00170.1 )
(BLAST)

0001: MAERANLVFH NKVIDGTAIK RLISRLIDHF GMAYTSHILD QVKTLGFQQA TATSISLGID DLLTIPSKGW LVQDAEQQSW ILEKHHHYGN VHAVEKLRQS
0101: IEIWYATSEY LRQEMNPNFR MTDPFNPVHM MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTSDAG
0201: YLTRRLVEVV QHIVVRRTDC GTIRGISVSP RNKNRMMSER IFIQTLIGRV LADDIYIGSR CVAFRNQDLG IGLVNRLITF GTQSISIRTP FTCRSTSWIC
0301: RLCYGRSPTH GDLVELGEAV GIIAGQSIGE PGTQLTLRTF HTGGVFTGGT AEHVRAPYNG KIKFNEDLVH PTRTRHGHPA FLCYIDLSVI IESEDIIHSV
0401: TIPPKSFLLV QNDQYVESEQ VIAEIREGTY TFHFKERVRK YIYSDSEGEM HWSTDVSHAP EFTYSNVHLL PKTSHLWILS GGSCGSSLIR FSIHKDQDQM
0501: NIPFLSAERK SISSLSVNND QVSQKFFSSD FADPKKLGIY DYSELNGNLG TSHYNLIYSA IFHENSDLLA KRRRNRFLIP FQSIQEQEKE FIPQSGISVE
0601: IPINGIFRRN SIFAFFDDPR YRRKSSGILK YGTLKADSII QKEDMIEYRG VQKIKTKYEM KVDRFFFIPE EVHILPESSA IMVQNYSIIG VDTRLTLNIR
0701: SQVGGLIRVE KKKKRIELKI FSGDIHFPDK TDKISRHSGI LIPPGRGKKN SKESKKFKNW IYVQRITPTK KKFFVLVRPV ATYEIADSIN LATLFPQDLF
0801: REKDNIQLRV FNYILYGNGK PTRGISDTSI QLVRTCLVLN WDKNSSLEEV RAFFVEVSTK GLIQDFIRIG LVKSHISYIR KRNNSPDSGL ISADHMNPFY
0901: SISPKSGILQ QSLRQNHGTI RMFLNRNKES QSLLILSSSN CFRMGPFNHV KHHNVINQSI KKNTLITIKN SSGPLGTATP ISNFYSFLPL LTYNQISLIK
1001: YFQLDNLKYI FQKINSYLID ENGIILNLDP YSNVVLNPFK LNWYFLHQNY HHNYCEETST IISLGQFFCE NVCIAKKEPH LKSGQVLIVQ RDSAVIRSAK
1101: PYLATPGAKV HGHYSEILYE GDTLVTFIYE KSRSGDITQG LPKVEQVLEV RSIDSISLNL EKRIKGWNKC ITRILGIPWG FLIGAELTIV QSRISLVNKI
1201: QKVYRSQGVQ IHNRHIEIIV RQITSKVLVS EEGMSNVFLP GELIGLLRAE RTGRALEEAI CYRAVLLGIT RASLNTQSFI SEASFQETAR VLAKAALRGR
1301: IDWLKGLKEN VVLGGVIPAG TGFNKGLVHC SRQHTNIILE KKTKNLALFE GDMRDILFYH REFCDSSISK SDFSRI

Arabidopsis Description

RPOC2DNA-directed RNA polymerase subunit beta'' [Source:UniProtKB/Swiss-Prot;Acc:P56764]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.