CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	HORVU4Hr1G019530.1	AT4G09570.1	19130088
ATCG00180.1	HORVU5Hr1G032550.3	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	12.61	100.0
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	12.61	100.0
HORVU3Hr1G023530.1	Barley	cytosol	44.72	96.83
HORVU3Hr1G023450.1	Barley	cytosol	44.72	95.91
CAA33987	Rice	cytosol	93.26	93.26
GRMZM5G899366_P01	Maize	plastid	92.38	92.24
HORVU0Hr1G033880.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.29	83.7
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.29	83.7
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	6.16	82.35
ATCG00180.1	Thale cress	cytosol, mitochondrion	77.71	77.94
Solyc08g028950.1.1	Tomato	nucleus	20.82	75.53
PGSC0003DMT400076161	Potato	cytosol	46.04	75.12
HORVU3Hr1G092640.2	Barley	cytosol	7.33	74.63
KRH75289	Soybean	cytosol	7.48	71.83
Solyc01g017470.1.1	Tomato	mitochondrion	13.64	65.96
Solyc12g062580.1.1	Tomato	cytosol	11.29	45.83
Zm00001d036307_P001	Maize	nucleus	59.53	35.99
HORVU0Hr1G036780.1	Barley	cytosol	1.76	21.43
HORVU4Hr1G071640.1	Barley	nucleus	1.76	20.34
HORVU0Hr1G033870.1	Barley	nucleus	1.61	13.41
HORVU0Hr1G034190.1	Barley	cytoskeleton, cytosol, nucleus	2.93	10.58
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	2.93	10.58
HORVU4Hr1G045370.2	Barley	nucleus	8.5	9.95
HORVU6Hr1G049130.7	Barley	nucleus	9.82	4.54
AGP50747	Barley	nucleus	9.82	4.54

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:1.10.40.90	MapMan:15.6.1.2.1.3	Gene3D:2.40.40.20
EntrezGene:4525121	EnsemblPlants:AGP50746	EnsemblPlantsGene:AGP50746	ProteinID:AGP50746	ProteinID:AGP50746.1	ProteinID:AMA20237.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	ENA:KC912687.1:CDS:22812..24860	HAMAP:MF_01323	PFAM:PF00623	PFAM:PF04983
PFAM:PF04997	PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_asu
InterPro:RNApol_RpoC1	GO:S4Z187	UniProt:S4Z187	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI0000E8A88F
RefSeq:YP_874644.1	SEG:seg	:	:	:	:

Description

rpoC1RNA polymerase beta

Coordinates

chrPt:+:22812..24860

Molecular Weight (calculated)

78179.6 Da

IEP (calculated)

9.289

GRAVY (calculated)

-0.340

Length

682 amino acids

Sequence
(BLAST)

001: MIDQYKHQQL QIGLVSPQQI KAWANKNLPN GEAVGEVTRP STFHYKTDKP EKDGLFCERI FGPIKSGICG CGNSRASGAE NEDERFCQKC GVEFVDSRIR
101: RYQMGYIKLA CPVTHVWYLK GLPSYIANLL DKPLKKLEGL VYGDFSFARP STKKPTFLRL RGLFEEEIAS CNHSISPFFS TPGFATFRNR EIATGAGAIR
201: EQLADLDLRI IIENSLVEWK ELEDEGYSGD EWEDRKRRIR KVFLIRRMQL AKHFIQTNVE PEWMVLCLLP VLPPELRPIV YRSGDKVVTS DINELYKRVI
301: RRNNNLAYLL KRSELAPADL VMCQEKLVQE AVDTLLDSGS RGQPTRDGHN KVYKSLSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHQCGLPLE
401: IAIKLFQLFV IRDLITKRAT SNVRIAKRKI WEKEPIVWEI LQEVMRGHPV LLNRAPTLHR LGIQAFQPTL VEGRTISLHP LVCKGFNADF DGDQMAVHLP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPICV PTQDMLIGLY VLTIGKRRGI CANRYNSFRN YPNLKVNYNN NNSKYRKDKE PHFSSSYDAL GAYRQKLISL
601: DSPLWLRWNL DQRVIGSREV PIEIQYESLG TYHEIYAHYL IMGNRKKEIR SIYIRTTLGH ISFYREIEEA VQGFSQAYSY TT

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.