Factsheet for HORVU6Hr1G049130.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50747	Barley	nucleus	100.0	100.0
Solyc01g017390.1.1	Tomato	mitochondrion	0.68	16.39
HORVU3Hr1G023530.1	Barley	cytosol	3.32	15.56
HORVU3Hr1G023450.1	Barley	cytosol	3.32	15.41
HORVU4Hr1G045370.2	Barley	nucleus	5.89	14.92
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.88	13.68
HORVU4Hr1G071640.1	Barley	nucleus	0.47	11.86
Solyc01g017380.1.1	Tomato	cytosol	0.68	11.76
TraesCSU01G252700.1	Wheat	cytosol	0.74	10.48
AGP50746	Barley	cytosol	4.54	9.82
HORVU0Hr1G033870.1	Barley	nucleus	0.47	8.54
HORVU0Hr1G034190.1	Barley	cytoskeleton, cytosol, nucleus	1.02	7.94
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	1.02	7.94
Solyc01g017370.1.1	Tomato	cytosol	0.81	7.27
Solyc07g021220.1.1	Tomato	cytosol	0.81	7.14
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	0.34	5.81
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	0.34	5.81
HORVU0Hr1G036780.1	Barley	cytosol	0.2	5.36
HORVU3Hr1G092640.2	Barley	cytosol	0.2	4.48
TraesCS2A01G470300.1	Wheat	cytosol	0.2	3.66
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.2	3.26
HORVU0Hr1G033880.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.2	3.26

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.150.390	Gene3D:1.10.1790.20	Gene3D:1.10.274.100
MapMan:15.6.1.2.1.4	EntrezGene:4525121	EntrezGene:4525122	ProteinID:AGP50747.1	ProteinID:AMA20238.1	ncoils:Coil
InterPro:DNA-dir_RpoC2_beta_pp	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:HORVU6Hr1G049130	EnsemblPlants:HORVU6Hr1G049130.7	InterPro:IPR038120
HAMAP:MF_01324	PFAM:PF04998	PFAM:PF05000	PANTHER:PTHR19376	PANTHER:PTHR19376:SF42	InterPro:RNA_pol_Rpb1_4
InterPro:RNA_pol_Rpb1_5	InterPro:Rpb1_funnel_sf	UniProt:S4Z0D4	SUPFAM:SSF64484	TIGRFAMs:TIGR02388	UniParc:UPI0000E8A890
RefSeq:YP_874645.1	SEG:seg	:	:	:	:

Description

DNA-directed RNA polymerase subunit beta'' [Source:UniProtKB/TrEMBL;Acc:S4Z0D4]

Coordinates

chrchr6H:+:299485379..299489839

Molecular Weight (calculated)

169672.0 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.494

Length

1477 amino acids

Sequence
(BLAST)

0001: MAERANLVFH NKEIDGTGMK RLISRLIDHF GMGYTSHILD QLKTLGFYQA TTTSISLGIE DLLTIPSKGW LVQDAEQQSF LLEKHYYYGA VHAVEKLRQS
0101: VEIWYATSEY LKQEMNSNFR ITDPSNPVYL MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTADAG
0201: YLTRRLVEVV QHIIVRRRDC GTIRGISVSP QNGMTEKLFV QTLIGRVLAD DIYIGSRCIA ARNQDIGIGL VNRFITAFRA QPFRAQPIYI RTPFTCRSTS
0301: WICQLCYGRS PTHSDLVELG EAVGIIAGQS IGEPGTQLTL RTFHTGGVFT GGTADLVRSP SNGKIQFNEN LVHPTRTRHG QPAFLCYIDL HVTIQSQDIL
0401: YSVNIPSKSL ILVQNDQYVK SEQVIAEIRA GTSTLHFKER VQKHIYSESD GEMHWSTDVY HAPEYQYGNL RRLPKTSHLW ILSVSMCRSS IASFSLHKDQ
0501: DQMNTYGKKD REILDYSTSD RIMSNGHWNL IYPSIFQDNS DLLAKKRRNR FVIPLQYHQE QEKELISCFG ISIEIPFMGV LRRNTIFAYF DDPRYRKDKK
0601: GSGIVKFRYR TLEEEYRTRA EDSEEEYETL EHEYRTREDE YETLEESKYG ILEDEYEYET LENEYGSPEN KYGNPENEYR TLEKDSEEEY GNPESKYRTQ
0701: EDEYGTLEED SEDEYGSPGE SGEEKYGTLE EDSEEDSEDE YESPEEDSIL KKEGLIEHRG TKEFSLKYQK EVDRFFFILQ ELHILPRSSS LKILDNSIIG
0801: VDTQLTKNTR SGLGGLVRVK RKKSHTELKI FSGDIHFPEE ADKILGGCLI PPERQKKDSK ESKKKKNWVY VQRKKILKSK EKYFVSVRPT VAYEMDEGRN
0901: LATLFPQDLL QEENNLQIRL VNFIYHENSK LTQRIYHTNS QFVRTCLVVN WEQEEKEKAG ASLVEVRAND LIRDFLRIEL VKSTISYTRK RYDRTSGGPT
1001: PHNRLDRANS NSFYSKAKIE SLSQHQEAIG TLLNRNKEYQ SLMILSASNC SRIGLFKNSK HPNAIKEWNP RIPILEIFGP LGAIVASISH FSSSYYLLTH
1101: NKILLKKYLF VDNLKQTFQV LQELKYSLID ENKRISNFDS NIMLDPFLLN CHFVHHDSWE ETLAIIHLGQ FICENVCLFK SHIKKSGQIF SVNMDSFVIR
1201: AAKPYLATTG ATVNGHYGEI LYKGDRLVTF IYEKSRSSDI TQGLPKVEQI FEARSIDSLS PNLERRIEDW NERIPRILGV PWGFLIGAEL TIAQSRISLV
1301: NKIQKVYRSQ GVQIHNRHIE IIIRQVTSKV RVSEDGMSNV FSPGELIGLL RAERAGRALD ESIYYRAILL GITRASLNTQ SFISEASFQE TARVLAKAAL
1401: RGRIDWLKGL KENVVLGGII PVGTGFQKFV HRSPQDKNLY FEIKKKNLFA SEMRDFLFLH TELVSSDSDV TNNFYET

Best Arabidopsis Sequence Match ( ATCG00170.1 )
(BLAST)

0001: MAERANLVFH NKVIDGTAIK RLISRLIDHF GMAYTSHILD QVKTLGFQQA TATSISLGID DLLTIPSKGW LVQDAEQQSW ILEKHHHYGN VHAVEKLRQS
0101: IEIWYATSEY LRQEMNPNFR MTDPFNPVHM MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTSDAG
0201: YLTRRLVEVV QHIVVRRTDC GTIRGISVSP RNKNRMMSER IFIQTLIGRV LADDIYIGSR CVAFRNQDLG IGLVNRLITF GTQSISIRTP FTCRSTSWIC
0301: RLCYGRSPTH GDLVELGEAV GIIAGQSIGE PGTQLTLRTF HTGGVFTGGT AEHVRAPYNG KIKFNEDLVH PTRTRHGHPA FLCYIDLSVI IESEDIIHSV
0401: TIPPKSFLLV QNDQYVESEQ VIAEIREGTY TFHFKERVRK YIYSDSEGEM HWSTDVSHAP EFTYSNVHLL PKTSHLWILS GGSCGSSLIR FSIHKDQDQM
0501: NIPFLSAERK SISSLSVNND QVSQKFFSSD FADPKKLGIY DYSELNGNLG TSHYNLIYSA IFHENSDLLA KRRRNRFLIP FQSIQEQEKE FIPQSGISVE
0601: IPINGIFRRN SIFAFFDDPR YRRKSSGILK YGTLKADSII QKEDMIEYRG VQKIKTKYEM KVDRFFFIPE EVHILPESSA IMVQNYSIIG VDTRLTLNIR
0701: SQVGGLIRVE KKKKRIELKI FSGDIHFPDK TDKISRHSGI LIPPGRGKKN SKESKKFKNW IYVQRITPTK KKFFVLVRPV ATYEIADSIN LATLFPQDLF
0801: REKDNIQLRV FNYILYGNGK PTRGISDTSI QLVRTCLVLN WDKNSSLEEV RAFFVEVSTK GLIQDFIRIG LVKSHISYIR KRNNSPDSGL ISADHMNPFY
0901: SISPKSGILQ QSLRQNHGTI RMFLNRNKES QSLLILSSSN CFRMGPFNHV KHHNVINQSI KKNTLITIKN SSGPLGTATP ISNFYSFLPL LTYNQISLIK
1001: YFQLDNLKYI FQKINSYLID ENGIILNLDP YSNVVLNPFK LNWYFLHQNY HHNYCEETST IISLGQFFCE NVCIAKKEPH LKSGQVLIVQ RDSAVIRSAK
1101: PYLATPGAKV HGHYSEILYE GDTLVTFIYE KSRSGDITQG LPKVEQVLEV RSIDSISLNL EKRIKGWNKC ITRILGIPWG FLIGAELTIV QSRISLVNKI
1201: QKVYRSQGVQ IHNRHIEIIV RQITSKVLVS EEGMSNVFLP GELIGLLRAE RTGRALEEAI CYRAVLLGIT RASLNTQSFI SEASFQETAR VLAKAALRGR
1301: IDWLKGLKEN VVLGGVIPAG TGFNKGLVHC SRQHTNIILE KKTKNLALFE GDMRDILFYH REFCDSSISK SDFSRI

Arabidopsis Description

RPOC2DNA-directed RNA polymerase subunit beta'' [Source:UniProtKB/Swiss-Prot;Acc:P56764]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.