Factsheet for Solyc07g021220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062580.1.1	Tomato	cytosol	68.45	68.45
Solyc10g031560.1.1	Tomato	nucleus	32.14	47.79
Solyc01g017470.1.1	Tomato	mitochondrion	35.12	41.84
Solyc01g017390.1.1	Tomato	mitochondrion	13.69	37.7
Solyc01g017380.1.1	Tomato	cytosol	19.05	37.65
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	9.52	31.37
Solyc08g028950.1.1	Tomato	nucleus	34.52	30.85
HORVU0Hr1G036780.1	Barley	cytosol	5.36	16.07
TraesCSU01G252700.1	Wheat	cytosol	5.36	8.57
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	5.36	4.76
TraesCS2A01G470300.1	Wheat	cytosol	1.19	2.44
HORVU4Hr1G045370.2	Barley	nucleus	7.14	2.06
HORVU3Hr1G092640.2	Barley	cytosol	0.6	1.49
Solyc01g017370.1.1	Tomato	cytosol	1.19	1.21
HORVU6Hr1G049130.7	Barley	nucleus	7.14	0.81
AGP50747	Barley	nucleus	7.14	0.81
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	0.0	0.0
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
Solyc07g039230.1.1	Tomato	cytosol	0.0	0.0
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.40.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	UniProt:K4CCY0
PFAM:PF00623	PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_asu	SMART:SM00663	SUPFAM:SSF64484
EnsemblPlantsGene:Solyc07g021220.1	EnsemblPlants:Solyc07g021220.1.1	UniParc:UPI000276C7D3	:	:	:

Description

No Description!

Coordinates

chr7:+:16791120..16791919

Molecular Weight (calculated)

19444.4 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.298

Length

168 amino acids

Sequence
(BLAST)

001: MPGELVMCQE KLVQQAVDTL LDNGIQGQTM RDGYNKVYKS FSYVIEGKKE NFVRLYLCWG AIWVHPLVYK GFNADFGGDK RVVHVYLSLE AQVEAHLLMF
101: SHIHSMSLAI RDPISVQTQD ILIRLYVLMS GNHRGICVNG YNPCNRRNYQ NQNKSENSYY NYAKNHFL

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.