Factsheet for Solyc01g017380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	49.41	82.35
Solyc08g028950.1.1	Tomato	nucleus	50.59	22.87
Solyc07g021220.1.1	Tomato	cytosol	37.65	19.05
Solyc12g062580.1.1	Tomato	cytosol	35.29	17.86
HORVU0Hr1G036780.1	Barley	cytosol	9.41	14.29
TraesCSU01G252700.1	Wheat	cytosol	11.76	9.52
TraesCS2A01G470300.1	Wheat	cytosol	2.35	2.44
HORVU4Hr1G045370.2	Barley	nucleus	11.76	1.72
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	3.53	1.59
HORVU3Hr1G092640.2	Barley	cytosol	1.18	1.49
Solyc01g017370.1.1	Tomato	cytosol	2.35	1.21
HORVU6Hr1G049130.7	Barley	nucleus	11.76	0.68
AGP50747	Barley	nucleus	11.76	0.68
Solyc01g017390.1.1	Tomato	mitochondrion	0.0	0.0
Solyc10g031560.1.1	Tomato	nucleus	0.0	0.0
Solyc07g039230.1.1	Tomato	cytosol	0.0	0.0
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
Solyc01g017470.1.1	Tomato	mitochondrion	0.0	0.0
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	0.0	0.0
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	0.0	0.0
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.40.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	UniProt:K4AUR9
PFAM:PF04997	PANTHER:PTHR19376	InterPro:RNA_pol_Rpb1_1	SUPFAM:SSF64484	EnsemblPlantsGene:Solyc01g017380.1	EnsemblPlants:Solyc01g017380.1.1
UniParc:UPI0002762936	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:23943361..23943618

Molecular Weight (calculated)

9647.7 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.266

Length

85 amino acids

Sequence
(BLAST)

1: MCKEKLLQEA VDTLLDNRIR GQPMRYGHNK DYKSFSDVIE GKEGRFRETL LGKLVDYSGR SVIVVGPSFS LHQCGLPCEI AIELF

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.