Factsheet for Solyc01g017370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G028560.1	Barley	cytosol, extracellular, nucleus	24.24	46.51
HORVU0Hr1G037280.1	Barley	cytosol, extracellular, nucleus	24.24	46.51
HORVU3Hr1G092640.2	Barley	cytosol	18.18	44.78
HORVU0Hr1G036770.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.21	38.04
Solyc07g039230.1.1	Tomato	cytosol	15.76	22.81
TraesCS2A01G470300.1	Wheat	cytosol	9.7	19.51
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	1.21	3.92
HORVU4Hr1G045370.2	Barley	nucleus	12.12	3.43
Solyc01g017380.1.1	Tomato	cytosol	1.21	2.35
Solyc07g021210.1.1	Tomato	cytosol, extracellular, plastid	1.21	2.11
Solyc07g021220.1.1	Tomato	cytosol	1.21	1.19
Solyc12g062580.1.1	Tomato	cytosol	1.21	1.19
Solyc08g028950.1.1	Tomato	nucleus	1.21	1.06
HORVU6Hr1G049130.7	Barley	nucleus	7.27	0.81
AGP50747	Barley	nucleus	7.27	0.81
HORVU0Hr1G028570.1	Barley	cytoskeleton, cytosol, nucleus	0.61	0.53
TraesCSU01G252700.1	Wheat	cytosol	0.0	0.0
Solyc10g031560.1.1	Tomato	nucleus	0.0	0.0
Solyc01g017470.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017390.1.1	Tomato	mitochondrion	0.0	0.0
HORVU0Hr1G036780.1	Barley	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:35.1	GO:GO:0000428	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
UniProt:K4AUR8	PFAM:PF04997	InterPro:RNA_pol_Rpb1_1	SUPFAM:SSF64484	EnsemblPlantsGene:Solyc01g017370.1	EnsemblPlants:Solyc01g017370.1.1
UniParc:UPI0002762935	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:23941752..23943082

Molecular Weight (calculated)

19300.6 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.258

Length

165 amino acids

Sequence
(BLAST)

001: MEIVGEVTKP YTFHYKTNKR KKDGLFCERI FCPIKSGICA CGNYRVIGDE KEDPKFFEQC GIGFVDPRIR RYHMGYIKLA CLVTHVWPIT KNHTFLRLRG
101: LFENEIQSWK YSIPLFFITQ GFDTFRNREI SIGVGAIREQ LAKLNLRIII ENSLVEWEKL GGKDT

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.