Factsheet for Zm00001d036307_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00180.1	Zm00001d004812_P002	AT4G09570.1	19130088
ATCG00180.1	Zm00001d023560_P002	AT4G09570.1	19130088
ATCG00180.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G023530.1	Barley	cytosol	25.8	92.38
HORVU3Hr1G023450.1	Barley	cytosol	25.71	91.19
Solyc01g017460.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	3.72	82.35
Solyc08g028950.1.1	Tomato	nucleus	12.77	76.6
KRH75289	Soybean	cytosol	4.52	71.83
PGSC0003DMT400076161	Potato	cytosol	23.58	63.64
GRMZM5G899366_P01	Maize	plastid	37.06	61.2
CAA33987	Rice	cytosol	36.52	60.41
Solyc01g017470.1.1	Tomato	mitochondrion	7.54	60.28
AGP50746	Barley	cytosol	35.99	59.53
ATCG00180.1	Thale cress	cytosol, mitochondrion	30.59	50.74
Solyc12g062580.1.1	Tomato	cytosol	6.65	44.64

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.40.90	MapMan:15.6.1.2.1.3	Gene3D:2.40.270.10
Gene3D:2.40.40.20	Gene3D:3.90.1800.10	UniProt:A0A1D6LLQ3	ProteinID:AQK80614.1	ncoils:Coil	InterPro:DNA-dir_RNAP_su2_dom
InterPro:DNA-dir_RNAP_su2_hyb_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR037033	InterPro:IPR038120	PFAM:PF00562
PFAM:PF00623	PFAM:PF04560	PFAM:PF04983	PFAM:PF04997	PFAM:PF04998	ScanProsite:PS01166
PANTHER:PTHR19376	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_Rpb1_5	InterPro:RNA_pol_Rpb2_7
InterPro:RNA_pol_asu	InterPro:RNA_pol_bsu_CS	InterPro:Rpb1_funnel_sf	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI00084259D1
EnsemblPlantsGene:Zm00001d036307	EnsemblPlants:Zm00001d036307_P001	EnsemblPlants:Zm00001d036307_T001	SEG:seg	:	:

Description

Putative DNA-directed RNA polymerase beta' subunit family protein

Coordinates

chr6:+:83725262..83735547

Molecular Weight (calculated)

130223.0 Da

IEP (calculated)

5.403

GRAVY (calculated)

-0.577

Length

1128 amino acids

Sequence
(BLAST)

0001: MGAVGGNLPP PSLDRGRRMA SWPLDRPLAN RIRAEKREIK VGDKVAGRHG NKGIISKILP RQDMPYLQDG TPVDMVFNPL GVPSRMNVGQ IFESSLGLAG
0101: DLLKKHYRIA PFDERYEQEA SRKLVFSELY EASKQTKNPW VFEPEYPGKS RIFDGRTGDP FEQPILIGKS YILKLIHQVD EKIHGRSTGP YSLVTQQPVR
0201: GRAKQGGQQI GEMEVWALEG FGVAHILQEI LTYKSDHLIA RQEILNATIW GKRVSNHEDP PESFRVLVRE LRSLALELNH FLVSEKNFQE IATGAGAIRE
0301: QLADLDLRII IENSLVEWKE LEDEGYSGDE WEDRKRRIRK VFLIRRMQLA KHFIQSNVEP EWMVLCLLPV LPPELRPIVY RSGDKVVTSD INELYKRVIR
0401: RNNNLAYLLK RSELAPADLV MCQEKLVQEV VDTLLDSGSR GQPTRDGHNK VYKSLSDVIE GKEGRFRETL LGKRVDYSGR SVIVVGPSLS LHQCGLPLEI
0501: AIKLFQLFVI RDLITKRATS NVRIAKRKIW EKEPIVWEIL QEVMRGHPVL LNRAPTLHRL GIQAFQPTLV EGRTICLHPL VCKGFNADFD GDQMAVHLPL
0601: SLEAQAEARL LMFSHMNLLS PAIGDPICVL TQDMLIGLYV LTIGNRLGAR GNAAQVHQLV GMRGLMADPQ GQMIDLPIQS NLREGLSLTE YIISCYGARK
0701: GVVDTAVRTA DAGYLTRRLV EVVQHIIVRR RDCGTIQESE QVIAEIRAGT STLHFKEKDQ DQMNTYSFSV DGRYIFDFSM ANDQVSHRLL DTFGKKDREI
0801: LDYLTPDRIM FNGHWNCFYP SILQDNSDLL VKKRRNRLVV PLQYHQEQEK ERISCLGISM EIPFMGVLRR NTIFAYFDDP RYRKDKRGSG IVKFRYRTLE
0901: EEYRTQEEEY RTREEEYRTR EEDSEDEYES PENKYRTREG EGEYKILEDE YRTLEDEYET LEDEYGILED EYRTLEKDSE EEYGSLENKY RTREGEGEYE
1001: ILEEESEEEY GSSEDGSEKE YGTLEEDSEE DSEEDSEDEY GSPEEDSILK KEGFIEHRGI KEFSLKYQKE VDRFFFILQE LHILPRSSSL KNKSSKRVQL
1101: IHYRRISKGE LRIGMNVYQE FLGFPGDS

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.