Factsheet for Solyc11g068730.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

cytosol 3
plastid 1
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067695	Potato	cytoskeleton, cytosol, peroxisome	97.44	97.44
KRH30383	Soybean	cytosol, nucleus	87.46	87.71
VIT_06s0080g00940.t01	Wine grape	cytosol	86.04	87.03
KRH25286	Soybean	cytosol	86.32	86.57
CDY35679	Canola	cytosol	78.35	77.25
Bra020184.1-P	Field mustard	cytosol	77.78	76.47
CDY09130	Canola	cytosol	77.78	76.47
AT5G22300.1	Thale cress	cytosol, peroxisome, plastid	76.35	75.49
TraesCS6A01G340200.1	Wheat	cytosol	19.37	37.36

Protein Annotations

Gene3D:3.60.110.10	MapMan:9.5.2.5	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016810	InterPro:IPR003010
InterPro:IPR036526	UniProt:K4DA30	InterPro:Nitrilase/CN_hydratase_CS	PFAM:PF00795	ScanProsite:PS00920	ScanProsite:PS00921
PFscan:PS50263	PANTHER:PTHR23088	PANTHER:PTHR23088:SF31	SUPFAM:SSF56317	EnsemblPlantsGene:Solyc11g068730.1	EnsemblPlants:Solyc11g068730.1.1
UniParc:UPI000276A611	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:53362887..53367504

Molecular Weight (calculated)

37756.9 Da

IEP (calculated)

4.710

GRAVY (calculated)

0.017

Length

351 amino acids

Sequence
(BLAST)

001: MALVPNPVVN EGPLFAEVEM GGDSSSSTVR ATVVQASTVF YDTPATLDKA ERLLAEAASY GAQLVVFPEA FIGGYPRGST FGVSIGNRTD KGKEEFRKYH
101: ASAIDVPGPE VDLLAAMAGK YKVYLVMGVI ERDGYTLYCT VLFFDSQGHY LGKHRKIMPT ALERIIWGFG DGSTIPVYDT PVGKIGAAIC WENRMPLLRT
201: AMYAKGIEIY CAPTADAREV WQASMTHIAL EGGCFVLSAN QFCRRKDYPP PPEYVFSGTE EDLTPDSVVC AGGSVIISPS GAVLAGPNYD GEALISADLD
301: LGEIVRAKFD FDVVGHYARP EILSLIVKDH PVSPVSFTST SSTSKTESSS T

Best Arabidopsis Sequence Match ( AT5G22300.1 )
(BLAST)

001: MSMQQETSHM TAAPQTNGHQ IFPEIDMSAG DSSSIVRATV VQASTVFYDT PATLDKAERL LSEAAENGSQ LVVFPEAFIG GYPRGSTFEL AIGSRTAKGR
101: DDFRKYHASA IDVPGPEVER LALMAKKYKV YLVMGVIERE GYTLYCTVLF FDSQGLFLGK HRKLMPTALE RCIWGFGDGS TIPVFDTPIG KIGAAICWEN
201: RMPSLRTAMY AKGIEIYCAP TADSRETWLA SMTHIALEGG CFVLSANQFC RRKDYPSPPE YMFSGSEESL TPDSVVCAGG SSIISPLGIV LAGPNYRGEA
301: LITADLDLGD IARAKFDFDV VGHYSRPEVF SLNIREHPRK AVSFKTSKVM EDESV

Arabidopsis Description

NIT4Bifunctional nitrilase/nitrile hydratase NIT4 [Source:UniProtKB/Swiss-Prot;Acc:P46011]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.