Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 5
- golgi 4
- extracellular 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
nucleus: 26228564 |
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G007400.1 | Wheat | extracellular | 76.8 | 64.0 |
| HORVU1Hr1G000680.1 | Barley | vacuole | 48.0 | 55.56 |
| TraesCS1A01G007700.1 | Wheat | golgi | 34.8 | 43.5 |
| HORVU1Hr1G000700.1 | Barley | extracellular, vacuole | 57.6 | 41.98 |
| TraesCS1A01G007200.1 | Wheat | nucleus, plastid | 34.4 | 41.75 |
| TraesCS6A01G049800.1 | Wheat | extracellular | 42.0 | 37.63 |
| TraesCS6A01G049100.1 | Wheat | vacuole | 42.4 | 37.46 |
| TraesCS6A01G049400.1 | Wheat | plastid | 41.6 | 36.62 |
| TraesCS6A01G049600.1 | Wheat | vacuole | 41.6 | 36.24 |
| TraesCS6A01G049700.1 | Wheat | vacuole | 42.8 | 36.03 |
| TraesCS6A01G049200.1 | Wheat | vacuole | 42.8 | 34.97 |
| TraesCS6A01G048900.1 | Wheat | vacuole | 43.2 | 33.96 |
| TraesCS6A01G049500.1 | Wheat | vacuole | 31.2 | 33.77 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G007300.1 | EnsemblPlantsGene:TraesCS1A01G007300 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | PANTHER:PTHR33454 | PFAM:PF13016 | PRINTS:PR00208 | PRINTS:PR00209 |
| SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1A:-:3845783..3847150
Molecular Weight (calculated)
28281.4 Da
IEP (calculated)
7.979
GRAVY (calculated)
-0.466
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTLLILTII AVALTTTTAN IQVDPSGQVQ WPQQQQPFPQ PQQPFSQQPQ QIFPQPQQTF PQQPQQPFPQ LQQPQQPLPQ PQQPQQPFPQ QQQPLIQPYL
101: QQQMNPCKNY LLQQCNPVSL VSSLVSMILP RSDCKVMRQQ CCQQLAQIPQ QLQCAAIHGI VHSIIMQQEQ QQQQQQQQQQ QQQQGIQIMR PLFQLVQGQG
201: IIQPQQPAQL EVIRSLVLGT LPTMCNVFVP PECSTTKAPF ASIVADIGGQ
101: QQQMNPCKNY LLQQCNPVSL VSSLVSMILP RSDCKVMRQQ CCQQLAQIPQ QLQCAAIHGI VHSIIMQQEQ QQQQQQQQQQ QQQQGIQIMR PLFQLVQGQG
201: IIQPQQPAQL EVIRSLVLGT LPTMCNVFVP PECSTTKAPF ASIVADIGGQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.