Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 6
- golgi 4
- extracellular 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
plastid: 24136528 nucleus: 26228564 |
msms PMID:
24136528
doi
Cell-Free Science and Technology Research Center, Ehime University, Matsuyama, Ehime, Japan.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G049800.1 | Wheat | extracellular | 96.13 | 97.85 |
| TraesCS6A01G049600.1 | Wheat | vacuole | 97.54 | 96.52 |
| TraesCS6A01G049100.1 | Wheat | vacuole | 96.13 | 96.47 |
| TraesCS6A01G049500.1 | Wheat | vacuole | 74.3 | 91.34 |
| TraesCS6A01G049700.1 | Wheat | vacuole | 94.72 | 90.57 |
| TraesCS6A01G049200.1 | Wheat | vacuole | 97.18 | 90.2 |
| TraesCS6B01G065600.1 | Wheat | endoplasmic reticulum, extracellular | 71.83 | 83.95 |
| TraesCS6A01G048900.1 | Wheat | vacuole | 85.56 | 76.42 |
| TraesCS6B01G065900.1 | Wheat | plastid | 26.76 | 58.91 |
| TraesCS1A01G007700.1 | Wheat | golgi | 31.69 | 45.0 |
| TraesCS1A01G007200.1 | Wheat | nucleus, plastid | 30.63 | 42.23 |
| TraesCS1A01G007300.1 | Wheat | nucleus, plastid | 36.62 | 41.6 |
| TraesCS1A01G007400.1 | Wheat | extracellular | 41.55 | 39.33 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G049400.1 | EnsemblPlantsGene:TraesCS6A01G049400 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | PFAM:PF00234 | PRINTS:PR00208 | PRINTS:PR00209 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:+:25314174..25315268
Molecular Weight (calculated)
32668.0 Da
IEP (calculated)
8.133
GRAVY (calculated)
-0.736
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTFLILALL AIVATTATTA VRVPVPQLQP QHPSQQQPQE QVPLVQQQQF LGQQQPFPPQ QPYPQPQPFP SQQPYLQLQP FPQPQLPYSQ PQPFRPQQPY
101: PQPQPQYSQP QQPISQQQQQ QQQQQQQQQQ QILQQILQQQ LIPCMDVVLQ QHNIAHGRSQ VLQQSTYQLL QELCCQHLWQ IPEQSQCQAI HNVVHAIILH
201: QQQKPQQQPS SQVSFQQPLQ QYPLGQGSFR PSQQNPQARG SVQPQQLPQF EEIRNLALQT LPAMCNVYIP PYCTIAPFGI FGTN
101: PQPQPQYSQP QQPISQQQQQ QQQQQQQQQQ QILQQILQQQ LIPCMDVVLQ QHNIAHGRSQ VLQQSTYQLL QELCCQHLWQ IPEQSQCQAI HNVVHAIILH
201: QQQKPQQQPS SQVSFQQPLQ QYPLGQGSFR PSQQNPQARG SVQPQQLPQF EEIRNLALQT LPAMCNVYIP PYCTIAPFGI FGTN
001: MMSHGGGGGV SNGGGGDAER MLAQAEKLLL SGDLNGSKTY AIRACEADHS LVDHAELILA VADTLVAGES RIRGTTSDLP DWYAVLRLVR LTHNPELVAT
101: QYSRLAVLLN PSRNRYPYSE QAFRLISDAW YVLSDPSRKT LYDRELHLSQ FGQLGQLGFQ LFNQTPQSQS QSPQHHQQQS QSPQHPNQNQ TVSFQNQQLP
201: FQLHQPHFAQ AVQTQSQSQQ QRSQFDQQLL QEQQQASWRQ QVGQEHSSGS SGDWKRPVEE VRLINLNNAT ERVQSSRRFA EPERPPSRSF EGSSHRTPST
301: ELTWASKPTP VSEPVRHSEL VPWQYSEPAR QYQLSSRSSE AAQLSLLPSV SDSSHASQPT RSNQSHAVSK PQPVSKPHPP FPMSQPPPTS NPFPLSQPPS
401: NSKPFPMSQS SQNSKPFPVS QSSQKSKPLL VSQSSQRSKP LPVSQSLQNS NPFPVSQPSS NSKPFPVSQP QPASNPFPVS QPRPNSQPFS MSQPSSTARP
501: FPASQPPAAS KSFPISQPPT TSKPFVSQPP NTSKPMPVSQ PPTTSKPLPV SQPPPTFQST CPSQPPAASS SLSPLPPVFN STQSFQSPPV STTPSAVPEA
601: STIPSPPAPA PVAQPTHVFN QTPPPEQTPK SGAARTDSEP EVSSFWTTCP YCYVLYEYPI IYEESVLKCQ TKSCRRAYQA VKVPSPPPVA EEDSYYCCWG
701: FYPIGFSEVV TKIPVTGLHT KIPVSDLPKS APKKPSPKVY YYDDEEEDDD SYIGSDPSED DDDDDWLMNG TKRRKNVKQS KAKATTKPKR QKVIEVD
101: QYSRLAVLLN PSRNRYPYSE QAFRLISDAW YVLSDPSRKT LYDRELHLSQ FGQLGQLGFQ LFNQTPQSQS QSPQHHQQQS QSPQHPNQNQ TVSFQNQQLP
201: FQLHQPHFAQ AVQTQSQSQQ QRSQFDQQLL QEQQQASWRQ QVGQEHSSGS SGDWKRPVEE VRLINLNNAT ERVQSSRRFA EPERPPSRSF EGSSHRTPST
301: ELTWASKPTP VSEPVRHSEL VPWQYSEPAR QYQLSSRSSE AAQLSLLPSV SDSSHASQPT RSNQSHAVSK PQPVSKPHPP FPMSQPPPTS NPFPLSQPPS
401: NSKPFPMSQS SQNSKPFPVS QSSQKSKPLL VSQSSQRSKP LPVSQSLQNS NPFPVSQPSS NSKPFPVSQP QPASNPFPVS QPRPNSQPFS MSQPSSTARP
501: FPASQPPAAS KSFPISQPPT TSKPFVSQPP NTSKPMPVSQ PPTTSKPLPV SQPPPTFQST CPSQPPAASS SLSPLPPVFN STQSFQSPPV STTPSAVPEA
601: STIPSPPAPA PVAQPTHVFN QTPPPEQTPK SGAARTDSEP EVSSFWTTCP YCYVLYEYPI IYEESVLKCQ TKSCRRAYQA VKVPSPPPVA EEDSYYCCWG
701: FYPIGFSEVV TKIPVTGLHT KIPVSDLPKS APKKPSPKVY YYDDEEEDDD SYIGSDPSED DDDDDWLMNG TKRRKNVKQS KAKATTKPKR QKVIEVD
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.