Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 6
- golgi 4
- extracellular 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G049800.1 | Wheat | extracellular | 95.41 | 96.77 |
| TraesCS6A01G049400.1 | Wheat | plastid | 96.47 | 96.13 |
| TraesCS6A01G049600.1 | Wheat | vacuole | 96.47 | 95.12 |
| TraesCS6A01G049500.1 | Wheat | vacuole | 75.27 | 92.21 |
| TraesCS6A01G049700.1 | Wheat | vacuole | 96.11 | 91.58 |
| TraesCS6A01G049200.1 | Wheat | vacuole | 97.17 | 89.87 |
| TraesCS6B01G065600.1 | Wheat | endoplasmic reticulum, extracellular | 71.73 | 83.54 |
| TraesCS6A01G048900.1 | Wheat | vacuole | 85.51 | 76.1 |
| TraesCS6B01G065900.1 | Wheat | plastid | 27.56 | 60.47 |
| TraesCS1A01G007700.1 | Wheat | golgi | 32.51 | 46.0 |
| TraesCS1A01G007200.1 | Wheat | nucleus, plastid | 31.45 | 43.2 |
| TraesCS1A01G007300.1 | Wheat | nucleus, plastid | 37.46 | 42.4 |
| TraesCS1A01G007400.1 | Wheat | extracellular | 42.05 | 39.67 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G049100.1 | EnsemblPlantsGene:TraesCS6A01G049100 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | ncoils:Coil | PFAM:PF00234 | PRINTS:PR00208 | PRINTS:PR00209 |
| SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:+:25107445..25108479
Molecular Weight (calculated)
32553.8 Da
IEP (calculated)
7.836
GRAVY (calculated)
-0.757
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTFLILALL AIVATTATTA VRVPVPQLQP QNPSQQQSQE QVPLVQQQQF LGQQQPFPPQ QPYPQPQPFP SQQPYLQLQP FPQPQLPYSQ PQPFRPQQPY
101: PQPQPQYSQP QHPISQQQQQ QQQQQQQEQQ ILQQILQQQL IPCMDVVLQQ HNIAHGRSQV LQQSTYQLLQ ELCCQHLWQI PEQSQCQAIH NVVHAIILRQ
201: QQKQQQQPSS QVSFQQPQQQ YPLGQGSFRP SQQNPQAQGS VQPQQLPQFE EIRNLALQTL PAMCNVYIPP YCTIAPFGIF GTN
101: PQPQPQYSQP QHPISQQQQQ QQQQQQQEQQ ILQQILQQQL IPCMDVVLQQ HNIAHGRSQV LQQSTYQLLQ ELCCQHLWQI PEQSQCQAIH NVVHAIILRQ
201: QQKQQQQPSS QVSFQQPQQQ YPLGQGSFRP SQQNPQAQGS VQPQQLPQFE EIRNLALQTL PAMCNVYIPP YCTIAPFGIF GTN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.