Factsheet for TraesCS1A01G007200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 1
vacuole 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, vacuole
iPSORT:	plastid
MultiLoc:	vacuole
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G010600.1	Wheat	vacuole	80.58	52.37
TraesCS1D01G001300.1	Wheat	vacuole	81.55	51.85
HORVU1Hr1G000640.1	Barley	vacuole	67.96	43.89
TraesCS1A01G007700.1	Wheat	golgi	36.41	37.5
TraesCS1A01G007300.1	Wheat	nucleus, plastid	41.75	34.4
TraesCS6A01G049100.1	Wheat	vacuole	43.2	31.45
TraesCS6A01G049800.1	Wheat	extracellular	42.23	31.18
TraesCS6A01G049400.1	Wheat	plastid	42.23	30.63
TraesCS6A01G049600.1	Wheat	vacuole	42.23	30.31
TraesCS6A01G049700.1	Wheat	vacuole	43.69	30.3
TraesCS6A01G049200.1	Wheat	vacuole	43.2	29.09
TraesCS1A01G007400.1	Wheat	extracellular	41.26	28.33
TraesCS6A01G048900.1	Wheat	vacuole	42.23	27.36
TraesCS6A01G049500.1	Wheat	vacuole	30.1	26.84

Protein Annotations

EnsemblPlants:TraesCS1A01G007200.1	EnsemblPlantsGene:TraesCS1A01G007200	Gene3D:1.10.110.10	GO:GO:0003674	GO:GO:0045735	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Glia_glutenin	PANTHER:PTHR33454	PFAM:PF13016	PRINTS:PR00208	PRINTS:PR00209
SEG:seg	SMART:SM00499	SUPFAM:SSF47699	TIGR:cd00261	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:3776618..3777238

Molecular Weight (calculated)

23671.6 Da

IEP (calculated)

8.221

GRAVY (calculated)

-0.661

Length

206 amino acids

Sequence
(BLAST)

001: MPLPHQQQIF PQQQQPPQQQ PFYQYQQPLT QQPYTREQPL PQQQPSVEEN QQLNLCKEFL LQQCNPEEKV SLLQSMIPFL RPKTSQQNNC QLKRQQCCRQ
101: LAHISEPSRC PAIHNIVHAI IMQQQQQHVD RGFVQPQPQQ LGQGMPMQPQ HQLGQGLSLP QQLAQFKLVR LLVIQTLPML CNVHVPSDCY TISAPFGGIT
201: AYNGGQ

Best Arabidopsis Sequence Match ( AT4G01760.1 )
(BLAST)

001: MDSDGVSVPL IHEHLMMPCN DLRRGDCCER LEAISDGYYC TTCDFFVHKK CGDEASECIE NPFHSNHPLR LGFLSRLQRQ HWLKVVRSCD LCGKNIGDLF
101: YRCEICDFDM DLHCAKYPPL EVIDIPEMHS HKLNLLKDRV EFDCDAKCGK IGYGFPYECH ECDSKFHVDC VRYSSSEEVK HPLEVNHSYH SLHPLKLLMG
201: QPPDYSDGKC RLCGRKIDDK LFYHCSSCNF TLDMRCVLNP PPKSVLDLKT HDHQLNLLPR LIFFTCNACG LNGDRSPYAC FQCDFLIHKD CFGLPRLINI
301: NRHDHRISRT SLIGIVNSVC GVCRQKVDWT CGGYSCQRCS TYIAHSKCAT REDVWNGKEL EGVPEEIEDI EPYVVIDDNT IQHFSHKEHY MRLNVNGLMC
401: EVNKRCNACN HPISPQSFYG CMDCDFILHQ NCAGFPRRKW HVLHNERLAL VTSEVNIFGC SACHKIFNGF RYEHEDTKLD VLCGSFSEPF IHPSHPHHPL
501: YCISPEDDEV CSGCNERSYH VLRCIEDNCG FILDFGCATF PQVVKHRIED QPLSLCYGEK ASGKYWCDIC EKETNPNTWF YTCKDHRASL HTWCVLGDFM
601: GLIPKSTIEL WNISYEVVLN NSISRPICRH CKSHCIPPII LKKIGTSDPY FCSLDCIESF KRLWRAK

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZSJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.