Factsheet for TraesCS1D01G036900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G035600.1	Wheat	endoplasmic reticulum, plasma membrane	87.96	96.69
TraesCS1B01G045300.1	Wheat	endoplasmic reticulum, extracellular	87.63	96.32
TraesCS1D01G037000.1	Wheat	endoplasmic reticulum, vacuole	86.96	94.55
Zm00001d035646_P001	Maize	endoplasmic reticulum, extracellular	60.2	66.42
Os05t0112800-01	Rice	extracellular	58.53	64.34
EES18898	Sorghum	cytosol, peroxisome, plastid	57.53	56.95
GSMUA_Achr10P...	Banana	extracellular	37.12	43.36
GSMUA_Achr10P...	Banana	extracellular	36.45	42.41
GSMUA_Achr10P...	Banana	extracellular	36.12	42.02
Bra037480.1-P	Field mustard	extracellular	35.79	41.0
CDX86299	Canola	extracellular	35.79	41.0
CDX85345	Canola	plasma membrane	35.45	40.61
AT5G48540.1	Thale cress	extracellular	35.12	39.92
TraesCS4D01G206200.1	Wheat	extracellular	35.12	38.89
VIT_07s0141g00930.t01	Wine grape	extracellular	33.11	37.79
VIT_07s0141g00870.t01	Wine grape	cytosol	18.39	36.42
KRG99540	Soybean	extracellular	31.1	36.19
Solyc09g057960.1.1	Tomato	extracellular, nucleus	31.44	36.02
PGSC0003DMT400091649	Potato	extracellular	31.1	35.09
VIT_07s0141g00840.t01	Wine grape	extracellular	30.77	33.82
TraesCS4D01G349300.1	Wheat	endoplasmic reticulum	22.07	27.85
TraesCS2D01G222200.1	Wheat	endoplasmic reticulum, plasma membrane	23.08	23.15
TraesCS3D01G025300.1	Wheat	extracellular, plasma membrane	21.4	22.94
TraesCS1D01G431100.1	Wheat	extracellular	20.4	19.61
TraesCS3D01G501300.3	Wheat	plasma membrane	21.07	15.52
TraesCS2D01G222500.1	Wheat	vacuole	20.74	15.09
TraesCS3D01G501200.1	Wheat	plasma membrane	21.07	9.05

Protein Annotations

EnsemblPlants:TraesCS1D01G036900.1	EnsemblPlantsGene:TraesCS1D01G036900	Gene3D:3.30.430.20	InterPro:GNK2	InterPro:GNK2_sf	InterPro:IPR002902
InterPro:IPR038408	PANTHER:PTHR32411	PANTHER:PTHR32411:SF44	PFAM:PF01657	PFscan:PS51473	SEG:seg
SignalP:SignalP-noTM	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:17236769..17237668

Molecular Weight (calculated)

31537.6 Da

IEP (calculated)

7.708

GRAVY (calculated)

0.102

Length

299 amino acids

Sequence
(BLAST)

001: MHANKSLVAA IASLRATHIT SKRIQQAMAS SSSSPLLMLL LLPLLLAMAR PCSAVDAIGT YCAKNGTSAE TQASIDQVLA ALVPRASAAY YATATAGRSS
101: SAVWGLAQCR GDVPRQDCSL CLAAAAKEVA SSCRGSSDGR VFYDYCLLRY STSNFVGLAD TGYTLILLNT QNATGVDLAA FDRAQGKLMS RVASEAGDAA
201: NKGLATDTTR LGSEGGGAKT TIYGLGWCTR DITAADCGLC VAQAVAELPN YCRYRRGCRV IYSSCMARYE VYPFFFPLDG ADESADELGQ CDKIVLNYP

Best Arabidopsis Sequence Match ( AT5G48540.1 )
(BLAST)

001: MKTLVVKCFL LLALVCSCRA ADSIWQLCNT NSNISASSQV SKNIDSLLAT LVSKTPSKGF KTTTSSSYNN KEKVYGLAQC RGDISNTDCS TCIQDAAKKI
101: REVCQNQSDS RILYDFCFLR YSQENFIGKL DTGAGLIYFN VANVTEIDPK KFDNELGALF DKIRSEAVLP KNKGLGKGKT KLTPFVTLNG LVQCTRDLSE
201: LDCAQCFATA VGSFMTTCHN KKGCRVLYSS CYVRYEFYPF YFPLDPAKTG PSVGRISSVH LSP

Arabidopsis Description

CRRSP55Cysteine-rich repeat secretory protein 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV60]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.