Factsheet for TraesCS6A01G052300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G566600.1	Wheat	extracellular, plasma membrane	21.58	56.42
HORVU6Hr1G010220.1	Barley	vacuole	65.92	41.67
TraesCS6B01G069900.2	Wheat	cytosol	76.34	35.35
TraesCS6A01G052200.1	Wheat	cytosol	72.62	34.01
TraesCS7A01G566800.1	Wheat	cytosol	47.02	33.19
TraesCSU01G112000.1	Wheat	cytosol, endoplasmic reticulum	69.94	33.17
TraesCS6A01G052500.1	Wheat	cytosol	70.24	33.05
TraesCS6A01G051900.4	Wheat	cytosol	67.71	31.6
TraesCS6A01G052400.1	Wheat	cytosol	44.05	24.58
TraesCS7A01G566500.1	Wheat	cytosol	20.68	24.05
TraesCS7A01G568100.1	Wheat	cytosol, plasma membrane	46.28	21.72
TraesCS4A01G309600.1	Wheat	cytosol	20.09	19.71
TraesCS7A01G567500.2	Wheat	mitochondrion, plastid	49.55	18.96
TraesCS7A01G478300.1	Wheat	cytosol	17.56	18.88
TraesCS6A01G415000.1	Wheat	cytosol	25.0	15.72
TraesCS3A01G044600.1	Wheat	cytosol	20.39	15.6
TraesCS7A01G333500.1	Wheat	cytosol, plastid	23.96	15.09
KXG27844	Sorghum	cytosol	25.3	14.83
TraesCS7A01G567400.1	Wheat	cytosol	23.36	14.7
OQU82958	Sorghum	cytosol	24.85	14.57
KXG27853	Sorghum	cytosol	24.85	14.55
KXG27846	Sorghum	cytosol	21.58	13.78
TraesCS7A01G567200.2	Wheat	cytosol	21.58	13.71
TraesCS5A01G036900.1	Wheat	cytosol	20.68	12.94
Zm00001d024396_P001	Maize	plastid	20.54	12.86
TraesCS2A01G495600.1	Wheat	mitochondrion	21.28	12.47
TraesCS1A01G376600.1	Wheat	cytosol	20.68	11.33
EES08064	Sorghum	cytosol	16.67	10.97
KXG27854	Sorghum	cytosol	16.67	10.95
KXG27860	Sorghum	cytosol	16.52	10.7
TraesCS1A01G152300.1	Wheat	cytosol	16.52	8.02
TraesCS7A01G557700.2	Wheat	cytosol	12.8	7.88
TraesCS1A01G242300.1	Wheat	cytosol	11.9	7.66
OQU82964	Sorghum	cytosol	9.97	7.48
TraesCS5A01G181200.1	Wheat	mitochondrion	10.27	7.08
TraesCS3A01G068200.1	Wheat	cytosol	10.71	7.07
TraesCS3A01G069800.2	Wheat	cytosol	9.38	6.75
TraesCS7A01G568700.2	Wheat	mitochondrion	6.99	6.55
TraesCS3A01G069300.1	Wheat	cytosol	9.82	6.54
TraesCS7A01G374100.1	Wheat	cytosol	9.52	6.41
TraesCS5A01G181400.1	Wheat	plastid	10.27	6.37
TraesCS5A01G292200.1	Wheat	cytosol	9.52	6.27
TraesCS3A01G068700.1	Wheat	cytosol	9.23	6.12
TraesCS3A01G068800.1	Wheat	cytosol, extracellular	9.23	6.1
TraesCS3A01G073800.1	Wheat	cytosol	8.93	6.07
TraesCS3A01G073700.1	Wheat	cytosol	8.78	5.98
TraesCS4A01G310200.1	Wheat	cytosol	3.42	2.7
TraesCS7A01G567300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	0.6	2.15
TraesCS6A01G051800.1	Wheat	cytosol	0.6	1.87
TraesCS3A01G068500.2	Wheat	cytosol, extracellular	0.6	0.7
TraesCS5A01G533700.1	Wheat	cytosol	0.6	0.62
TraesCS3A01G068900.1	Wheat	cytosol	0.3	0.57
TraesCS3A01G069200.1	Wheat	extracellular	0.45	0.5
TraesCS7A01G566900.1	Wheat	cytosol	0.0	0.0
HORVU6Hr1G010230.11	Barley	cytosol, plastid	0.0	0.0
TraesCS4A01G309500.4	Wheat	cytosol	0.0	0.0
TraesCS6A01G020600.1	Wheat	cytosol	0.0	0.0
TraesCS3A01G068300.1	Wheat	cytosol, extracellular	0.0	0.0
TraesCS7A01G566700.1	Wheat	cytosol	0.0	0.0
TraesCS3A01G068600.1	Wheat	cytosol	0.0	0.0
TraesCS7A01G478400.1	Wheat	cytosol	0.0	0.0
TraesCS7A01G043200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G052300.1	EnsemblPlantsGene:TraesCS6A01G052300	Gene3D:3.80.10.10	InterPro:HARBI1_dom	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR22930	PANTHER:PTHR22930:SF85	PFAM:PF13359	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:27056960..27059766

Molecular Weight (calculated)

76945.7 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.252

Length

672 amino acids

Sequence
(BLAST)

001: MMSSSIMPLK SLRILFITDL ACCTQLPDGL CQLPYLEIIQ IDRAPAIKRI GPEFIQSYHH YGPCPSQMVA AFPRLHNMNL VRMVEWEEWE WEEQMQAFPV
101: LQKLMLQRCK LKCLPPGLAS QARALNKLCI YHVHSLISLE NFPSLVDLEL DENLDLEMIT NLLRLQKLTI ENCPKLKVLE GIPALHRFVL AYNDMETIPK
201: YMGGINPRHL ELYCSLALLV SIAAGQSGPE WDKCSHVEHV KAYAREGGNS RKWYVLYIVD PYNLETNVSR SFMSRGTLTS FEDADRFEYV FKMSRKTFSY
301: ICSLVYVPSL EVMNSYTFDD GRLLSLEDRV AIALKRLYSS EPPETIGSSV SVSESTVLLV SERFVDAVYK RAKNHGRWPD SSKMDNIKSM FDKIHNMHNC
401: CGVICTTHIP FGPNLDHEKN DSILVQLVID PEMRFRAIWW GRVSSMNQSS ILHESYLFKE CEKGAWLNGG KLKVAVDGSE VGEYIVGDAG YPLLPWLLTP
501: YHEEDLSDSK AEFNRRHNAA TTCAQKALTR FKDTWKYLQG ETSCPVSPDS LVATIHACCY LHNIVIDMED DGAMPSVEEP DYYGEVRQLA NEDAVRARDM
601: LSLYFLKIMS SESVVGQVDM ENDLEVAATG SGDEDKEEKK HRQEHQRKRD MMMTRITLSK KYFFLPHLVS RW

Best Arabidopsis Sequence Match ( AT3G55350.1 )
(BLAST)

001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA

Arabidopsis Description

Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.