Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G144500.1 | Wheat | plasma membrane | 91.92 | 91.92 |
| HORVU6Hr1G031360.1 | Barley | mitochondrion, plastid | 91.54 | 91.54 |
| Os02t0175000-01 | Rice | mitochondrion | 71.43 | 71.56 |
| EES04614 | Sorghum | mitochondrion | 68.61 | 68.61 |
| TraesCS4B01G376000.1 | Wheat | plasma membrane | 37.78 | 39.88 |
| TraesCS4B01G370800.1 | Wheat | plasma membrane | 38.72 | 39.77 |
| TraesCS2B01G451700.3 | Wheat | plasma membrane | 41.92 | 38.72 |
| TraesCS2B01G451800.1 | Wheat | plastid | 37.78 | 36.15 |
| TraesCS2B01G451300.1 | Wheat | mitochondrion | 37.22 | 35.17 |
| TraesCS7B01G318400.1 | Wheat | plasma membrane | 35.9 | 35.11 |
| TraesCS7B01G318800.1 | Wheat | plasma membrane | 32.89 | 34.45 |
| TraesCS2B01G451400.1 | Wheat | plastid | 37.22 | 34.26 |
| TraesCS7B01G318700.1 | Wheat | plasma membrane | 34.21 | 33.46 |
| TraesCS2B01G451600.1 | Wheat | plasma membrane, plastid | 35.34 | 31.86 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G182600.1 | EnsemblPlantsGene:TraesCS6B01G182600 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0055085 | InterPro:Cat_transpt | PANTHER:PTHR31064 | PANTHER:PTHR31064:SF20 |
| PFAM:PF02386 | SEG:seg | TMHMM:TMhelix | MapMan:24.2.20 | : | : |
Description
No Description!
Coordinates
chr6B:-:204450597..204452601
Molecular Weight (calculated)
59907.4 Da
IEP (calculated)
9.163
GRAVY (calculated)
0.269
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSLVVYLK SLRTFCAFAP TKLSSFAKSA WQSMKYSCQF ICQTNPLFIQ VTYFTLISFA GYEALKVLNS QDKSNTLKDL DVLFTSVSAS TVSSMATVEM
101: EEFSSKQLWV LAILMLIGSE VFTSILGLHF MRAKFNTENS LNTRDHISHV DIESINVTNF DPNTSHGTKD EVSFSELHLA NKQHVDPKTT VLLGAAVTVY
201: LLITNLGSSL VIYLYLKLVP DAQEVLKRKG IGLFLFSVFT AISSVANCGF TPVNENMIIF QKNSGLLLLI IPQMLVGNTL FAPCLRFMVW SLQKITGKQE
301: WSFILEHPKA TRYRHLMSTR KSAYLVLTVV GFIILQTILF CSLEWSSEAI QEMSSYQKIV GALFQSTNAR HAGETIVDLS SISSAIIVLY TVMMYLPGYT
401: SLLPNYDDRY SKAEKRYSRK GLLEDWIFSQ LTYLAIFVML ICITEREALT TDPLNFNVFS ILFEVVSAYG NVGFSMGYSC KRLLKQDVHC KDASFGFVGK
501: WSDKGKMILI IVMVFGRLKA YNLKGGKAWK LR
101: EEFSSKQLWV LAILMLIGSE VFTSILGLHF MRAKFNTENS LNTRDHISHV DIESINVTNF DPNTSHGTKD EVSFSELHLA NKQHVDPKTT VLLGAAVTVY
201: LLITNLGSSL VIYLYLKLVP DAQEVLKRKG IGLFLFSVFT AISSVANCGF TPVNENMIIF QKNSGLLLLI IPQMLVGNTL FAPCLRFMVW SLQKITGKQE
301: WSFILEHPKA TRYRHLMSTR KSAYLVLTVV GFIILQTILF CSLEWSSEAI QEMSSYQKIV GALFQSTNAR HAGETIVDLS SISSAIIVLY TVMMYLPGYT
401: SLLPNYDDRY SKAEKRYSRK GLLEDWIFSQ LTYLAIFVML ICITEREALT TDPLNFNVFS ILFEVVSAYG NVGFSMGYSC KRLLKQDVHC KDASFGFVGK
501: WSDKGKMILI IVMVFGRLKA YNLKGGKAWK LR
001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
Arabidopsis Description
HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.