Factsheet for TraesCS4B01G376000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G361300.1	Wheat	plasma membrane	90.28	88.18
TraesCS4B01G370800.1	Wheat	plasma membrane	82.14	79.92
HORVU4Hr1G087960.1	Barley	golgi, plasma membrane, plastid	80.95	78.61
Os01t0307500-01	Rice	nucleus, peroxisome, plasma membrane	68.65	62.45
EES02854	Sorghum	plasma membrane	66.07	60.99
Zm00001d040627_P001	Maize	plasma membrane	63.1	59.44
VIT_11s0103g00090.t01	Wine grape	extracellular, plasma membrane	9.72	52.69
VIT_11s0103g00010.t01	Wine grape	plasma membrane, vacuole	35.52	48.25
GSMUA_Achr1P23660_001	Banana	plasma membrane	42.46	47.24
GSMUA_Achr1P23670_001	Banana	plasma membrane, plastid, vacuole	42.86	46.85
VIT_11s0103g00140.t01	Wine grape	plastid	49.21	45.93
VIT_11s0103g00050.t01	Wine grape	plasma membrane	20.04	45.5
AT4G10310.1	Thale cress	plasma membrane	45.63	45.45
VIT_11s0103g00150.t01	Wine grape	plasma membrane	49.21	45.01
VIT_11s0103g00130.t01	Wine grape	plasma membrane	49.4	44.78
KRH74148	Soybean	plasma membrane	46.43	44.66
KRH25841	Soybean	plasma membrane	49.4	44.31
CDY25243	Canola	mitochondrion, plasma membrane	44.05	43.79
Bra033189.1-P	Field mustard	mitochondrion, plasma membrane	44.05	43.79
KRH49067	Soybean	plasma membrane	35.52	43.66
KRH55676	Soybean	mitochondrion, plasma membrane	49.6	43.55
CDX94264	Canola	mitochondrion, plasma membrane	43.65	43.39
Bra037912.1-P	Field mustard	plasma membrane	42.66	43.35
CDX86865	Canola	plasma membrane	42.66	43.35
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	32.94	42.46
Bra037910.1-P	Field mustard	mitochondrion, plasma membrane	42.86	42.11
CDX86866	Canola	mitochondrion, plasma membrane	42.86	42.11
CDY05096	Canola	plasma membrane	36.9	41.8
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	41.47	41.72
CDX99535	Canola	mitochondrion, plasma membrane	43.06	41.33
CDX99538	Canola	plasma membrane	41.87	39.59
Solyc07g014690.2.1	Tomato	plasma membrane	43.06	39.1
TraesCS7B01G318800.1	Wheat	plasma membrane	38.49	38.19
TraesCS6B01G182600.1	Wheat	mitochondrion, plasma membrane	39.88	37.78
TraesCS2B01G451800.1	Wheat	plastid	41.47	37.59
TraesCS2B01G451300.1	Wheat	mitochondrion	41.47	37.12
TraesCS2B01G451400.1	Wheat	plastid	42.26	36.85
CDX90754	Canola	plastid	42.46	36.58
TraesCS7B01G318400.1	Wheat	plasma membrane	39.48	36.58
TraesCS7B01G318700.1	Wheat	plasma membrane	39.48	36.58
Bra000707.1-P	Field mustard	plastid	42.26	36.41
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	41.27	35.25
TraesCS2B01G451700.3	Wheat	plasma membrane	38.1	33.33

Protein Annotations

EnsemblPlants:TraesCS4B01G376000.1	EnsemblPlantsGene:TraesCS4B01G376000	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008324	GO:GO:0055085	InterPro:Cat_transpt	PANTHER:PTHR31064	PANTHER:PTHR31064:SF13
PFAM:PF02386	SEG:seg	TMHMM:TMhelix	MapMan:24.2.20	:	:

Description

No Description!

Coordinates

chr4B:-:659664819..659666877

Molecular Weight (calculated)

56186.2 Da

IEP (calculated)

8.300

GRAVY (calculated)

0.386

Length

504 amino acids

Sequence
(BLAST)

001: MSQHSKLHRA YQLLFFHVHP FWLQLLYFVS ISFFGFVILK ALPMKTGMPM DLDLIFTSVS ATTVSSMVAV EMESFSNPQL LLLTLLMLLG GEVFTSMLGL
101: HFTYLKSKTK EAQAPHEHDH ADKGKPAPSS SLQLTANTCM DDVDRVEQGF KDQPRYDRAF LTRLLLFIVL GYHVVVHLAG YSLMLVYLSV VSGARAVLAG
201: KGISLHTLSV FTVVSTFANG GFMPNNEGMV AFRSFPGLLL LVMPHVLLGN TLFPVFLRLA IWALRRVTRR PELGELQSIG YDHLLTSRHT CFLAFTVAMF
301: VLAQLLLFCA MEWGSDGLHG LTAAQKLVTA LFMSVNSRHT GEMVVDHSTV SSAVVVLYVV MMYLPPYTTF LPVEDDSDQQ VGADQHHQKR VTSIWRKLLM
401: SPLSCLAIFI AVVCITERRQ ISDDPLNFNI LNITVEVISA YGNVGFSTGY SCGRQVTPDG GCRDTWVGFS GKWSWQGKLV LIAVMFYGRL KKFSMHGGEA
501: WMII

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.