CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90754	Canola	plastid	85.62	65.13
AT4G10310.1	Thale cress	plasma membrane	71.24	62.65
CDX86866	Canola	mitochondrion, plasma membrane	71.01	61.6
CDX94264	Canola	mitochondrion, plasma membrane	69.21	60.75
CDY25243	Canola	mitochondrion, plasma membrane	69.21	60.75
CDX86865	Canola	plasma membrane	67.19	60.28
CDX99535	Canola	mitochondrion, plasma membrane	70.34	59.62
CDX99538	Canola	plasma membrane	66.52	55.53
KRH49067	Soybean	plasma membrane	38.65	41.95
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	44.27	39.32
GSMUA_Achr1P23670_001	Banana	plasma membrane, plastid, vacuole	39.55	38.18
TraesCS4D01G361300.1	Wheat	plasma membrane	43.15	37.21
TraesCS4B01G370800.1	Wheat	plasma membrane	43.15	37.07
Solyc07g014690.2.1	Tomato	plasma membrane	46.07	36.94
TraesCS4B01G376000.1	Wheat	plasma membrane	41.8	36.9
KRH74148	Soybean	plasma membrane	43.37	36.83
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	31.24	35.55
HORVU4Hr1G087960.1	Barley	golgi, plasma membrane, plastid	40.9	35.07
KRH25841	Soybean	plasma membrane	44.27	35.05
KRH55676	Soybean	mitochondrion, plasma membrane	44.72	34.67
OQU82274	Sorghum	plasma membrane	34.38	34.62
GSMUA_Achr1P23660_001	Banana	plasma membrane	34.16	33.55
Zm00001d040627_P001	Maize	plasma membrane	40.0	33.27
Os01t0307500-01	Rice	nucleus, peroxisome, plasma membrane	41.35	33.21
Os04t0607600-01	Rice	plasma membrane	37.3	33.2
TraesCS2D01G428300.1	Wheat	plasma membrane	33.03	33.18
EES02854	Sorghum	plasma membrane	40.45	32.97
TraesCS2D01G428400.1	Wheat	vacuole	32.81	32.81
VIT_11s0103g00050.t01	Wine grape	plasma membrane	15.96	31.98
Zm00001d002378_P001	Maize	plastid	37.08	31.19
TraesCS2B01G451800.1	Wheat	plastid	38.43	30.76
TraesCS2B01G451300.1	Wheat	mitochondrion	38.88	30.73
TraesCS2D01G428200.1	Wheat	mitochondrion	38.43	30.37
TraesCS2A01G430600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	39.33	30.07
TraesCS2B01G451400.1	Wheat	plastid	38.88	29.93
HORVU2Hr1G100450.3	Barley	plastid	38.88	29.73
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	37.75	28.47
HORVU2Hr1G100420.2	Barley	plastid	31.24	26.08

Protein Annotations

EnsemblPlants:CDY05096	EnsemblPlantsGene:GSBRNA2T00119860001	GO:A0A078EV34	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0055085	InterPro:Cat_transpt	PANTHER:PTHR31064
PANTHER:PTHR31064:SF20	PFAM:PF02386	ProteinID:CDY05096	ProteinID:CDY05096.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEA011	MapMan:24.2.20	:	:	:	:

Description

BnaC03g28940D

Coordinates

chrLK031959:+:590589..593074

Molecular Weight (calculated)

50970.4 Da

IEP (calculated)

10.109

GRAVY (calculated)

0.382

Length

445 amino acids

Sequence
(BLAST)

001: MDRVAGRKFC KIRSKLYKSR SCFLNFVYFL SFSFLGFLAV KVSNPRTTSR PHDLDIFFTS VSAITVSSMS TVDMEVFSNT QLIIITILMF IGGPIFTSFL
101: NIYLSHFTKF VFPHSKIKHL IGSFKADHTI EDLRLDQENI TDRHEIPSQT NEKASKCLYL VVIGYHLVTN IAGSMLLLVY VSFVKTARDV LRSKEISALT
201: FSIFTTVSTF ATCGFVPTNE NMIIFRKNSG LLWLLIPLVL MGNTLFPCFL RLLIWGLSKT TKREEFGYIL KNRKKMGYSH LLSVRLCVFL GLTVLGFILI
301: QLFLFCTFSW SSESLAGMNW YEKLVGSLFQ VVNSRHTGET IVDLSTLSPA ILILFILMMY LPPYTLFMPF TMKKKNKKEE ENDSGYKKGG KKSGLLVSQL
401: SFLVICIFLI SITERQKLRR DPLNFNVLNI TLEVVRYIFI SLYLH

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.