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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 5
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G428300.1 Wheat plasma membrane 74.43 74.27
Zm00001d002378_P001 Maize plastid 85.75 71.64
TraesCS2D01G428400.1 Wheat vacuole 71.72 71.24
Os04t0607600-01 Rice plasma membrane 76.02 67.2
TraesCS2B01G451300.1 Wheat mitochondrion 74.66 58.61
TraesCS2D01G428200.1 Wheat mitochondrion 74.21 58.26
TraesCS2B01G451800.1 Wheat plastid 72.4 57.55
TraesCS2B01G451400.1 Wheat plastid 74.89 57.27
TraesCS2A01G430600.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 74.89 56.87
HORVU2Hr1G100450.3 Barley plastid 74.21 56.36
VIT_11s0103g00090.t01 Wine grape extracellular, plasma membrane 11.76 55.91
TraesCS2B01G451600.1 Wheat plasma membrane, plastid 72.62 54.41
VIT_11s0103g00010.t01 Wine grape plasma membrane, vacuole 41.18 49.06
VIT_11s0103g00050.t01 Wine grape plasma membrane 23.98 47.75
HORVU2Hr1G100420.2 Barley plastid 50.45 41.84
KRH74148 Soybean plasma membrane 46.15 38.93
PGSC0003DMT400077052 Potato endoplasmic reticulum, vacuole 44.12 38.92
AT4G10310.1 Thale cress plasma membrane 44.34 38.74
VIT_11s0103g00140.t01 Wine grape plastid 46.61 38.15
Solyc07g014680.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 33.71 38.11
EES02854 Sorghum plasma membrane 47.06 38.1
Bra037912.1-P Field mustard plasma membrane 42.53 37.9
CDX86865 Canola plasma membrane 42.31 37.7
VIT_11s0103g00130.t01 Wine grape plasma membrane 47.06 37.41
VIT_11s0103g00150.t01 Wine grape plasma membrane 46.61 37.39
KRH25841 Soybean plasma membrane 47.51 37.37
CDY25243 Canola mitochondrion, plasma membrane 42.76 37.28
Bra033189.1-P Field mustard mitochondrion, plasma membrane 42.76 37.28
KRH55676 Soybean mitochondrion, plasma membrane 47.74 36.76
CDX94264 Canola mitochondrion, plasma membrane 42.08 36.69
CDX86866 Canola mitochondrion, plasma membrane 41.86 36.06
Bra037910.1-P Field mustard mitochondrion, plasma membrane 41.86 36.06
EES04614 Sorghum mitochondrion 42.76 35.53
CDX99535 Canola mitochondrion, plasma membrane 41.86 35.24
CDY05096 Canola plasma membrane 34.62 34.38
CDX99538 Canola plasma membrane 40.95 33.96
Solyc07g014690.2.1 Tomato plasma membrane 41.63 33.15
CDX90754 Canola plastid 42.99 32.48
Bra000707.1-P Field mustard plastid 42.99 32.48
KRH49067 Soybean plasma membrane 29.64 31.95
EER90327 Sorghum mitochondrion 36.88 29.91
Protein Annotations
MapMan:24.2.20UniProt:A0A1Z5REV6InterPro:Cat_transptGO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0006812GO:GO:0008150GO:GO:0008324GO:GO:0016020GO:GO:0016021
GO:GO:0055085GO:GO:0098655EnsemblPlants:OQU82274ProteinID:OQU82274ProteinID:OQU82274.1PFAM:PF02386
PANTHER:PTHR31064PANTHER:PTHR31064:SF7EnsemblPlantsGene:SORBI_3006G208100TMHMM:TMhelixUniParc:UPI000B8B9A55SEG:seg
Description
hypothetical protein
Coordinates
chr6:-:55773553..55777747
Molecular Weight (calculated)
48608.5 Da
IEP (calculated)
9.010
GRAVY (calculated)
0.262
Length
442 amino acids
Sequence
(BLAST)
001: MSAVEMEVFS HGQLLVLTAL MFGGGEVFLS LVGLASKWSK MRKQIMNRSR RVESHDDDDI ELETTTAAEA DSRSITTAVT EENDDDIPVD AKVLRRNAVR
101: SLFFIVLGIL LVVHVVGAVA VAAYVYAAPG ARQTLRRKAL NVWTFSVFTT VSTFSSCGFM PTNENMMVFS RDVPLQLLLV PQALVGNTLF PPLLAACVWA
201: AAAATRREEM VEIARKGREA TGYYHLLPAR RCWMLAGTVG GLIAVQVALV CGMEWGGALR GMSAGEKLSN ALFLAVNSRH TGESTLDLST LATAILVLFV
301: LMMYLPPYTT WFPFEENSKR GHHSTESQGI RLLKSTVLSQ LSYLTIFVIA ICITERRKLK EDPLNFNVLS IVVEVVSAYG NVGFSMGYSC SRQINPDGLC
401: TDRWTGFAGR WSDSGKLILI AVMFFGRLKK FSMKGGKAWK LS
Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)
001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
Arabidopsis Description
HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.