Factsheet for VIT_11s0103g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0103g00090.t01	Wine grape	extracellular, plasma membrane	15.09	60.22
VIT_11s0103g00050.t01	Wine grape	plasma membrane	31.54	52.7
GSMUA_Achr1P23670_001	Banana	plasma membrane, plastid, vacuole	51.75	41.65
OQU82274	Sorghum	plasma membrane	49.06	41.18
VIT_11s0103g00140.t01	Wine grape	plastid	59.84	41.11
VIT_11s0103g00150.t01	Wine grape	plasma membrane	59.84	40.29
TraesCS2D01G428300.1	Wheat	plasma membrane	47.71	39.95
VIT_11s0103g00130.t01	Wine grape	plasma membrane	59.57	39.75
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	53.1	39.32
KRH74148	Soybean	plasma membrane	55.26	39.12
TraesCS2D01G428400.1	Wheat	vacuole	45.82	38.2
KRH25841	Soybean	plasma membrane	56.06	37.01
Os04t0607600-01	Rice	plasma membrane	49.87	37.0
KRH55676	Soybean	mitochondrion, plasma membrane	56.6	36.59
GSMUA_Achr1P23660_001	Banana	plasma membrane	44.2	36.2
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	37.47	35.55
TraesCS4B01G376000.1	Wheat	plasma membrane	48.25	35.52
EES02854	Sorghum	plasma membrane	51.21	34.8
TraesCS4D01G361300.1	Wheat	plasma membrane	47.98	34.5
Zm00001d040627_P001	Maize	plasma membrane	49.33	34.21
TraesCS4B01G370800.1	Wheat	plasma membrane	47.71	34.17
KRH49067	Soybean	plasma membrane	37.47	33.9
Zm00001d002378_P001	Maize	plastid	47.44	33.27
HORVU4Hr1G087960.1	Barley	golgi, plasma membrane, plastid	46.09	32.95
TraesCS2B01G451800.1	Wheat	plastid	48.25	32.19
TraesCS2B01G451300.1	Wheat	mitochondrion	48.79	32.15
TraesCS2D01G428200.1	Wheat	mitochondrion	47.71	31.44
TraesCS2A01G430600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	48.79	31.1
Os01t0307500-01	Rice	nucleus, peroxisome, plasma membrane	46.36	31.05
HORVU2Hr1G100450.3	Barley	plastid	48.25	30.76
TraesCS2B01G451400.1	Wheat	plastid	47.71	30.62
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	45.28	28.47
HORVU2Hr1G100420.2	Barley	plastid	30.73	21.39

Protein Annotations

EntrezGene:100260789	wikigene:100260789	MapMan:24.2.20	ProteinID:CCB62278	ProteinID:CCB62278.1	InterPro:Cat_transpt
UniProt:F6I5R0	EMBL:FN596751	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0015081
GO:GO:0016020	GO:GO:0016021	GO:GO:0035725	GO:GO:0055085	GO:GO:0098655	EntrezGene:LOC100260789
wikigene:LOC100260789	PFAM:PF02386	PANTHER:PTHR31064	PANTHER:PTHR31064:SF20	TMHMM:TMhelix	UniParc:UPI0002108C06
ArrayExpress:VIT_11s0103g00010	EnsemblPlantsGene:VIT_11s0103g00010	EnsemblPlants:VIT_11s0103g00010.t01	RefSeq:XP_002270986	RefSeq:XP_002270986.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:15393578..15395650

Molecular Weight (calculated)

42217.5 Da

IEP (calculated)

8.704

GRAVY (calculated)

0.400

Length

371 amino acids

Sequence
(BLAST)

001: AQNEQPCSNL EKGIEASCDE DLKYHSIKCL GYVVLFYLLV VHVVGSALIV LYLNLVPSAR EVLKNKGLRI LTFSVFTVVS TFSNCGFIPT NENMVVFKKN
101: SGLLLILIPQ ILLGNTLFAP CLRFVIWVLV KITRRVEFNY MLKNSREISY DHLLPGLYSC LLAITVFGFI LVQFLLLCFM EWNSEDLAGL NAYQKIVGML
201: FQTANSRHSG ESIFDLSVIS PAVLVLFVLM MYLPPHTSFL PIDGGEKALQ KEERRTEKRK YVEHLLLSQL SYLVIFVILV CIIEREKMKK DPLNFSVLNI
301: TIEIVSAYGN VGFSAGYQCN LQLKHEPHCK DLCYGFVGRW SNSGKFVLMF VMFFGRLKKF SMHGGRAWKL D

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.