Factsheet for VIT_11s0103g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0103g00140.t01	Wine grape	plastid	89.66	91.48
VIT_11s0103g00130.t01	Wine grape	plasma membrane	80.04	79.32
VIT_11s0103g00010.t01	Wine grape	plasma membrane, vacuole	40.29	59.84
VIT_11s0103g00090.t01	Wine grape	extracellular, plasma membrane	9.98	59.14
Solyc07g014690.2.1	Tomato	plasma membrane	57.53	57.12
GSMUA_Achr1P23670_001	Banana	plasma membrane, plastid, vacuole	43.38	51.84
VIT_11s0103g00050.t01	Wine grape	plasma membrane	20.15	50.0
TraesCS4B01G376000.1	Wheat	plasma membrane	45.01	49.21
TraesCS4D01G361300.1	Wheat	plasma membrane	45.92	49.03
GSMUA_Achr1P23660_001	Banana	plasma membrane	39.93	48.57
TraesCS4B01G370800.1	Wheat	plasma membrane	45.37	48.26
HORVU4Hr1G087960.1	Barley	golgi, plasma membrane, plastid	44.28	47.01
OQU82274	Sorghum	plasma membrane	37.39	46.61
EES02854	Sorghum	plasma membrane	45.73	46.15
TraesCS2D01G428300.1	Wheat	plasma membrane	36.84	45.82
Zm00001d002378_P001	Maize	plastid	43.19	44.99
Os04t0607600-01	Rice	plasma membrane	40.65	44.8
Os01t0307500-01	Rice	nucleus, peroxisome, plasma membrane	45.01	44.77
TraesCS2D01G428400.1	Wheat	vacuole	35.57	44.04
Zm00001d040627_P001	Maize	plasma membrane	42.65	43.93
TraesCS2B01G451800.1	Wheat	plastid	43.92	43.53
TraesCS2D01G428200.1	Wheat	mitochondrion	42.47	41.56
TraesCS2B01G451300.1	Wheat	mitochondrion	41.38	40.5
HORVU2Hr1G100450.3	Barley	plastid	42.29	40.03
TraesCS2B01G451400.1	Wheat	plastid	41.56	39.62
TraesCS2A01G430600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	41.74	39.52
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	39.93	37.29
HORVU2Hr1G100420.2	Barley	plastid	30.31	31.33

Protein Annotations

EntrezGene:100243683	wikigene:100243683	EntrezGene:100248819	wikigene:100248819	MapMan:24.2.20	EMBL:AM424979
ProteinID:CAN68938	ProteinID:CAN68938.1	ProteinID:CCB62273	ProteinID:CCB62273.1	InterPro:Cat_transpt	UniProt:F6I5Q5
EMBL:FN596751	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0015081	GO:GO:0016020
GO:GO:0016021	GO:GO:0035725	GO:GO:0055085	GO:GO:0098655	EntrezGene:LOC100243683	wikigene:LOC100243683
EntrezGene:LOC100248819	wikigene:LOC100248819	PFAM:PF02386	PANTHER:PTHR31064	PANTHER:PTHR31064:SF20	TMHMM:TMhelix
UniParc:UPI000210AB33	ArrayExpress:VIT_11s0103g00150	EnsemblPlantsGene:VIT_11s0103g00150	EnsemblPlants:VIT_11s0103g00150.t01	RefSeq:XP_002270183	RefSeq:XP_002270183.2
RefSeq:XP_002270300	RefSeq:XP_002270300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:15707762..15711764

Molecular Weight (calculated)

61854.2 Da

IEP (calculated)

9.715

GRAVY (calculated)

0.336

Length

551 amino acids

Sequence
(BLAST)

001: MMNSASFTGN KLHRLCTCSS FKLECLGRSI CFLVSSFYRF VILRFNTFSV QLCYFLCLSF QGFWVLKALK PRTPLRPRNL DLFFTSVSAA TVSSMSTVEM
101: EVFSNNQLLI LTLLMFVGGE IFTSMVELQL WRSKLKKPLI AENQVNSVSN NSSAPPDPRN PFGQFELRVV TVPSTSNSTL ETDEVQSQIE GRTKSLSSES
201: LKYHSIKFLG FVVMGYLVVV HVLGVTLVSA YIALVSSARD VLKQKGLKLF TFSLFTTVST LASCGFVPTN ENMIVFSKNS GLLLIIIPQV LLGNTLFPSC
301: LRFSIWTLGK FKKVESNYLL TNTREIGFLH LLPSLHSTLL VPTVLGFILI QFTLFCSMEW NSEGLNGLNS YQKIIGALFQ SVNSRHTGET IVDISILSPA
401: ILVLFVVMMY LPPYTSFLPT KGDEQSSEIC NGGRKRRRGK IVENLIFSQL SYLAIFIILI CITERRKMKD DPLNFTVLNI VIEVISAYGN VGFTAGYSCE
501: RLLKPDSSCQ SKWFGFSGKW SDEGKIILIF VMFFGRLKKF NMDGGRAWKL L

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.