Factsheet for TraesCS2D01G428300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82274	Sorghum	plasma membrane	74.27	74.43
TraesCS2D01G428400.1	Wheat	vacuole	74.04	73.71
TraesCS2D01G428200.1	Wheat	mitochondrion	88.71	69.8
TraesCS2B01G451800.1	Wheat	plastid	86.68	69.06
HORVU2Hr1G100450.3	Barley	plastid	83.52	63.57
Os04t0607600-01	Rice	plasma membrane	70.2	62.2
Zm00001d002378_P001	Maize	plastid	70.65	59.17
VIT_11s0103g00090.t01	Wine grape	extracellular, plasma membrane	11.51	54.84
HORVU2Hr1G100420.2	Barley	plastid	57.79	48.03
VIT_11s0103g00010.t01	Wine grape	plasma membrane, vacuole	39.95	47.71
VIT_11s0103g00050.t01	Wine grape	plasma membrane	22.35	44.59
VIT_11s0103g00140.t01	Wine grape	plastid	45.82	37.59
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	42.44	37.52
KRH74148	Soybean	plasma membrane	44.24	37.4
AT4G10310.1	Thale cress	plasma membrane	42.66	37.35
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	32.96	37.34
VIT_11s0103g00150.t01	Wine grape	plasma membrane	45.82	36.84
TraesCS4D01G361300.1	Wheat	plasma membrane	42.66	36.63
CDY25243	Canola	mitochondrion, plasma membrane	41.53	36.29
Bra033189.1-P	Field mustard	mitochondrion, plasma membrane	41.53	36.29
Bra037912.1-P	Field mustard	plasma membrane	39.95	35.69
KRH25841	Soybean	plasma membrane	44.92	35.41
CDX94264	Canola	mitochondrion, plasma membrane	40.41	35.31
CDX86865	Canola	plasma membrane	39.5	35.28
KRH55676	Soybean	mitochondrion, plasma membrane	45.6	35.19
VIT_11s0103g00130.t01	Wine grape	plasma membrane	44.02	35.07
Bra037910.1-P	Field mustard	mitochondrion, plasma membrane	40.41	34.89
CDX86866	Canola	mitochondrion, plasma membrane	40.41	34.89
TraesCS2D01G428500.1	Wheat	plasma membrane	35.67	34.57
CDX99535	Canola	mitochondrion, plasma membrane	40.41	34.1
TraesCS6D01G144500.1	Wheat	plasma membrane	39.73	33.08
CDY05096	Canola	plasma membrane	33.18	33.03
KRH49067	Soybean	plasma membrane	29.57	31.95
Solyc07g014690.2.1	Tomato	plasma membrane	39.95	31.89
TraesCS7D01G411200.1	Wheat	mitochondrion, plasma membrane	38.15	31.83
CDX99538	Canola	plasma membrane	38.15	31.71
CDX90754	Canola	plastid	41.31	31.28
Bra000707.1-P	Field mustard	plastid	41.08	31.11
TraesCS7D01G411300.1	Wheat	plasma membrane	33.86	29.53

Protein Annotations

EnsemblPlants:TraesCS2D01G428300.1	EnsemblPlantsGene:TraesCS2D01G428300	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008324	GO:GO:0055085	InterPro:Cat_transpt	PANTHER:PTHR31064	PANTHER:PTHR31064:SF7
PFAM:PF02386	SEG:seg	TMHMM:TMhelix	MapMan:24.2.20	:	:

Description

No Description!

Coordinates

chr2D:+:540162398..540165883

Molecular Weight (calculated)

48591.7 Da

IEP (calculated)

9.183

GRAVY (calculated)

0.298

Length

443 amino acids

Sequence
(BLAST)

001: MSTVEMEVFS NGQLLVLTVL MLVGGEVFLS LIGLASKWSK LRKQAAHKSR RVEIHHVAEL EMPPAAAADI DNPTSTADDE TSKSLEHVHD TRLRRDAVRS
101: LFFVVLAILL AVHVLGAGAI VAYIVHASPA ARRTLRDKAL NVWTFAVFTT VSTFSSCGYM PTNENMIVFK QDTGLQLLLV PQALVGNTLF PPLLAACVRT
201: AAAATRRVEL RETVKQGGEL TGYYHLLPAR RCAMLAATVV GFLAVQVAML CGMEWGGALR GMSPWEKVSN AVFLAVNSRH TGESTLDLST LAPAILVLFV
301: LMMYLPPYTT WLPFGESSSV KDHPREETQG VRLLKSTLLS QLSYLAIFVI AICVTEREKL KEDPLNFNLL SIVVEVVSAY GNVGFSMGYS CSRQISPDGM
401: CTDRWTGFAG RWSDSGKLIL ILVMLFGRMK KFSMKAGKSW KLS

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.