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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • plasma membrane 6
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_11s0103g00090.t01 Wine grape extracellular, plasma membrane 9.91 59.14
VIT_11s0103g00150.t01 Wine grape plasma membrane 57.12 57.53
VIT_11s0103g00140.t01 Wine grape plastid 55.14 56.67
VIT_11s0103g00130.t01 Wine grape plasma membrane 56.58 56.47
Solyc07g014680.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 34.23 48.59
Bra037912.1-P Field mustard plasma membrane 42.34 47.38
GSMUA_Achr1P23670_001 Banana plasma membrane, plastid, vacuole 39.28 47.29
AT4G10310.1 Thale cress plasma membrane 42.88 47.04
CDX86865 Canola plasma membrane 41.98 46.98
CDY05096 Canola plasma membrane 36.94 46.07
CDY25243 Canola mitochondrion, plasma membrane 41.98 45.96
Bra033189.1-P Field mustard mitochondrion, plasma membrane 41.98 45.96
CDX94264 Canola mitochondrion, plasma membrane 41.44 45.36
CDX86866 Canola mitochondrion, plasma membrane 41.8 45.22
Bra037910.1-P Field mustard mitochondrion, plasma membrane 41.62 45.03
CDX99535 Canola mitochondrion, plasma membrane 42.16 44.57
GSMUA_Achr1P23660_001 Banana plasma membrane 35.86 43.93
TraesCS4B01G376000.1 Wheat plasma membrane 39.1 43.06
TraesCS4D01G361300.1 Wheat plasma membrane 40.0 43.02
CDX99538 Canola plasma membrane 41.08 42.78
TraesCS4B01G370800.1 Wheat plasma membrane 39.64 42.47
HORVU4Hr1G087960.1 Barley golgi, plasma membrane, plastid 39.46 42.2
OQU82274 Sorghum plasma membrane 33.15 41.63
CDX90754 Canola plastid 42.52 40.34
Bra000707.1-P Field mustard plastid 42.34 40.17
TraesCS2D01G428300.1 Wheat plasma membrane 31.89 39.95
EES02854 Sorghum plasma membrane 39.1 39.74
Zm00001d040627_P001 Maize plasma membrane 38.2 39.63
Os04t0607600-01 Rice plasma membrane 35.68 39.6
Zm00001d002378_P001 Maize plastid 36.94 38.75
TraesCS2B01G451800.1 Wheat plastid 38.74 38.67
Os01t0307500-01 Rice nucleus, peroxisome, plasma membrane 38.2 38.27
TraesCS2D01G428400.1 Wheat vacuole 30.63 38.2
TraesCS2D01G428200.1 Wheat mitochondrion 36.76 36.23
TraesCS2B01G451300.1 Wheat mitochondrion 36.22 35.7
HORVU2Hr1G100450.3 Barley plastid 36.94 35.22
TraesCS2B01G451400.1 Wheat plastid 36.58 35.12
TraesCS2A01G430600.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 36.22 34.54
TraesCS2B01G451600.1 Wheat plasma membrane, plastid 34.41 32.37
HORVU2Hr1G100420.2 Barley plastid 25.41 26.45
Protein Annotations
MapMan:24.2.20InterPro:Cat_transptGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006810GO:GO:0006812GO:GO:0008150GO:GO:0008324GO:GO:0015081
GO:GO:0016020GO:GO:0016021GO:GO:0035725GO:GO:0055085GO:GO:0098655UniProt:K4CC88
PFAM:PF02386PANTHER:PTHR31064PANTHER:PTHR31064:SF20EnsemblPlantsGene:Solyc07g014690.2EnsemblPlants:Solyc07g014690.2.1TMHMM:TMhelix
UniParc:UPI000276BBD8SEG:seg::::
Description
No Description!
Coordinates
chr7:+:5103988..5106992
Molecular Weight (calculated)
63424.1 Da
IEP (calculated)
9.272
GRAVY (calculated)
0.324
Length
555 amino acids
Sequence
(BLAST)
001: MSSLSYLGEK LQHLFSSIFL YVSCLCGSTC FLISSLYRSI LFKVNKFFIQ LFYFIFISIF GFLILRNLNP RHSEDFTSTN LDLFFTSVSS ATISSMSTLE
101: MEVFSNSQLI VITFLMFIGG EVFISMIELY LIRPKFKPWR KNSKIESILS SNNSTTSSPR NSNFNNDDDY NIELDIVVLP DSPKSIKSDK DKDDFTSSDN
201: NLKYQSIKFL GVVTLVYLLV INIVGMSLVL MYLAFVSSAK DVLINKGLNT YIFTIFTTIS SFVSCGFVPT NENMMVFSKN SGLLWILIPL LLVGNALYPM
301: CLRFSIRLMG KLFVSKKREA KYLLKNSREI GHLHLFSRQH SRLLVVTMFG FILVQFILFC ALEWNSNGLN GLNSYQRFVG SLFQVVNARH TGETIVDIST
401: LSPPILVMFI VMMYLPPYTS FIPVKGVEEN TEEYLFGEKQ KRGKVVENFI FSQLCYLSLF IVLICITERK KMKDDPLNFN VLNITLEVIS AYGNVGFTTG
501: YSCDRMINGD QSCKNKWYGF VGKWSDEGKI IIIIIMFFGR LKKFNMQGGK AWKLL
Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)
001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
Arabidopsis Description
HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.