CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25243	Canola	mitochondrion, plasma membrane	95.07	95.07
CDX86866	Canola	mitochondrion, plasma membrane	71.2	70.37
CDY05096	Canola	plasma membrane	60.75	69.21
CDX86865	Canola	plasma membrane	67.46	68.95
CDX99535	Canola	mitochondrion, plasma membrane	69.63	67.24
CDX99538	Canola	plasma membrane	63.31	60.23
CDX90754	Canola	plastid	66.86	57.95
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	45.96	46.51
GSMUA_Achr1P23670_001	Banana	plasma membrane, plastid, vacuole	41.03	45.12
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	34.32	44.5
TraesCS4B01G370800.1	Wheat	plasma membrane	45.36	44.4
VIT_11s0103g00050.t01	Wine grape	plasma membrane	19.33	44.14
KRH74148	Soybean	plasma membrane	45.17	43.7
TraesCS4B01G376000.1	Wheat	plasma membrane	43.39	43.65
TraesCS4D01G361300.1	Wheat	plasma membrane	43.98	43.22
KRH49067	Soybean	plasma membrane	34.12	42.2
OQU82274	Sorghum	plasma membrane	36.69	42.08
KRH25841	Soybean	plasma membrane	46.55	41.99
Solyc07g014690.2.1	Tomato	plasma membrane	45.36	41.44
GSMUA_Achr1P23660_001	Banana	plasma membrane	36.49	40.84
HORVU4Hr1G087960.1	Barley	golgi, plasma membrane, plastid	41.62	40.66
KRH55676	Soybean	mitochondrion, plasma membrane	45.96	40.59
TraesCS2D01G428300.1	Wheat	plasma membrane	35.31	40.41
TraesCS2D01G428400.1	Wheat	vacuole	35.31	40.22
Os04t0607600-01	Rice	plasma membrane	39.45	40.0
EES02854	Sorghum	plasma membrane	41.62	38.64
Zm00001d002378_P001	Maize	plastid	40.04	38.37
Os01t0307500-01	Rice	nucleus, peroxisome, plasma membrane	41.03	37.55
Zm00001d040627_P001	Maize	plasma membrane	39.45	37.38
TraesCS2B01G451800.1	Wheat	plastid	40.83	37.23
TraesCS2D01G428200.1	Wheat	mitochondrion	41.22	37.12
TraesCS2B01G451300.1	Wheat	mitochondrion	41.03	36.94
TraesCS2A01G430600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	41.42	36.08
TraesCS2B01G451400.1	Wheat	plastid	41.03	35.99
HORVU2Hr1G100450.3	Barley	plastid	40.63	35.4
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	39.05	33.56
HORVU2Hr1G100420.2	Barley	plastid	29.39	27.95

Protein Annotations

MapMan:24.2.20	GO:A0A078E0S3	EnsemblPlants:CDX94264	ProteinID:CDX94264	ProteinID:CDX94264.1	InterPro:Cat_transpt
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00157300001
PFAM:PF02386	PANTHER:PTHR31064	PANTHER:PTHR31064:SF20	TMHMM:TMhelix	UniParc:UPI0004EF4A91	SEG:seg

Description

BnaC02g29240D

Coordinates

chrLK031880:-:974023..977257

Molecular Weight (calculated)

57976.3 Da

IEP (calculated)

9.070

GRAVY (calculated)

0.331

Length

507 amino acids

Sequence
(BLAST)

001: MERVGTRILA KIRPQVFAKH LSPLCLYFIY FLTFSILGFL ALKISKPRIT SRPHDLDLFF TSVSALAISS MSTIDMEVFS NTQLIFLTIL MFLGGEVFTS
101: FLNLYFSHFT KFVYPHNKVR HLTDSFDLDR RMEEPRIDIE NVIDHQEGSI QMIERASKCL YSVVLGYHVI THLVGSLLVL VYVNFIKTAR DVLSSKDISP
201: LTFSVFLTVS TFANGGFVPT NENMIIFRRN SGLLWLLIPQ GLMGNTLFPC FLVLIIWGLY KITKRNEFGY ILKNHKKMGY YHLLSVRVCI LLGLTVLGIF
301: LLQFLLFCTF EWSSESLEGM SWYEKLVGSL FQVVNSRHTG ETIVDISTLS PATLIFFITM MFLPPYTLFI PLTKENNNKD EEEDSGNGNK RKRSGFFVSQ
401: LSFLVICIFL VSIVEEEQLR RDPLNFNVFN ITLEVISAYG NVGFTTGYSC KRRLDASDGV CKDASYGFVG RWSPTGKIIL ILVMLYGRFK HFTSKSGRAW
501: ILYPSSF

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.