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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 4
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Predotar:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86865 Canola plasma membrane 84.05 90.32
Bra037912.1-P Field mustard plasma membrane 82.93 89.11
CDX86866 Canola mitochondrion, plasma membrane 66.42 69.01
CDX99535 Canola mitochondrion, plasma membrane 67.35 68.38
AT4G10310.1 Thale cress plasma membrane 63.79 67.19
CDY05096 Canola plasma membrane 55.53 66.52
CDY25243 Canola mitochondrion, plasma membrane 62.29 65.48
CDX94264 Canola mitochondrion, plasma membrane 60.23 63.31
CDX90754 Canola plastid 61.54 56.07
PGSC0003DMT400077052 Potato endoplasmic reticulum, vacuole 42.4 45.11
VIT_11s0103g00050.t01 Wine grape plasma membrane 18.76 45.05
GSMUA_Achr1P23670_001 Banana plasma membrane, plastid, vacuole 38.46 44.47
KRH49067 Soybean plasma membrane 33.4 43.41
KRH74148 Soybean plasma membrane 42.21 42.94
KRH25841 Soybean plasma membrane 44.65 42.35
TraesCS4B01G370800.1 Wheat plasma membrane 41.09 42.28
Solyc07g014680.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 30.77 41.94
TraesCS4B01G376000.1 Wheat plasma membrane 39.59 41.87
TraesCS4D01G361300.1 Wheat plasma membrane 40.34 41.67
Solyc07g014690.2.1 Tomato plasma membrane 42.78 41.08
HORVU4Hr1G087960.1 Barley golgi, plasma membrane, plastid 39.96 41.04
OQU82274 Sorghum plasma membrane 33.96 40.95
GSMUA_Achr1P23660_001 Banana plasma membrane 33.96 39.96
KRH55676 Soybean mitochondrion, plasma membrane 42.78 39.72
Os04t0607600-01 Rice plasma membrane 37.15 39.6
EES02854 Sorghum plasma membrane 40.34 39.38
Zm00001d040627_P001 Maize plasma membrane 39.21 39.07
TraesCS2D01G428400.1 Wheat vacuole 32.46 38.88
TraesCS2D01G428300.1 Wheat plasma membrane 31.71 38.15
Os01t0307500-01 Rice nucleus, peroxisome, plasma membrane 39.02 37.55
Zm00001d002378_P001 Maize plastid 36.59 36.86
TraesCS2B01G451300.1 Wheat mitochondrion 36.77 34.81
TraesCS2B01G451800.1 Wheat plastid 36.02 34.53
TraesCS2A01G430600.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 37.34 34.19
TraesCS2D01G428200.1 Wheat mitochondrion 36.02 34.1
TraesCS2B01G451400.1 Wheat plastid 36.77 33.91
HORVU2Hr1G100450.3 Barley plastid 36.77 33.68
TraesCS2B01G451600.1 Wheat plasma membrane, plastid 36.4 32.88
HORVU2Hr1G100420.2 Barley plastid 28.33 28.33
Protein Annotations
EnsemblPlants:CDX99538EnsemblPlantsGene:GSBRNA2T00107959001GO:A0A078EJS0GO:GO:0003674GO:GO:0005215GO:GO:0006810
GO:GO:0006812GO:GO:0008150GO:GO:0008324GO:GO:0055085InterPro:Cat_transptPANTHER:PTHR31064
PANTHER:PTHR31064:SF20PFAM:PF02386ProteinID:CDX99538ProteinID:CDX99538.1SEG:segTMHMM:TMhelix
UniParc:UPI0004EC6D2DMapMan:24.2.20::::
Description
BnaC09g24540D
Coordinates
chrLK031911:+:585330..589375
Molecular Weight (calculated)
60270.5 Da
IEP (calculated)
9.325
GRAVY (calculated)
0.403
Length
533 amino acids
Sequence
(BLAST)
001: MASFNSYTEP GNKMERVVAK LAKSRSLFFI YFFYFLSLSF LGFLALRISK PRTTSRPHDL DLFFISVSAI TVSSMSTVDM EVFSNTQLII ITIFILLGGE
101: IFTSFLHLYF SHCANFGFPY NKLRHLVCSL SSDTPIEDRR RDLENVTNHL KRPSQINERA SKCLYSVVLG YHLVTNLVGS MLLLAYVSFS VKDVLSSKDI
201: SPLTFSVFTT VSTFSNCGFV PTNENMVIFR KNSGLLLLLI PQVFMGNTLF PCFLVFIIWG LGKITKREEF GYILKNHKKM GYSPLLSVRL CVLLCLTALG
301: LVLIQFLLFC TFEWNSKSLG GMNSYQKLVA SLFQVVNSRH TGETIVDLST LSPAILVLFI FMMYLPPYTL FMPFARENDK KDGEYDSKNE KKVKKNGVYV
401: SQLAFLVICV LLISITESKK IRRDPLNFSI LNITLEVISA YGNVGFSTGY SCKRRLDVRD GSCKDAGYGF AGRWSPVVVK MIIVTVLHQY CLECLVNLTV
501: NFFLIELKLG RGVVDLFILD LYSGISLRLP ESL
Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)
001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
Arabidopsis Description
HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.