Factsheet for Zm00001d002378_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82274	Sorghum	plasma membrane	71.64	85.75
TraesCS2D01G428300.1	Wheat	plasma membrane	59.17	70.65
Os04t0607600-01	Rice	plasma membrane	66.73	70.6
TraesCS2D01G428400.1	Wheat	vacuole	56.71	67.42
TraesCS2D01G428200.1	Wheat	mitochondrion	67.67	63.59
TraesCS2B01G451800.1	Wheat	plastid	66.35	63.13
TraesCS2B01G451300.1	Wheat	mitochondrion	66.92	62.88
TraesCS2B01G451400.1	Wheat	plastid	67.67	61.94
TraesCS2A01G430600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.49	61.34
HORVU2Hr1G100450.3	Barley	plastid	65.78	59.79
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	64.46	57.8
VIT_11s0103g00090.t01	Wine grape	extracellular, plasma membrane	9.83	55.91
VIT_11s0103g00010.t01	Wine grape	plasma membrane, vacuole	33.27	47.44
HORVU2Hr1G100420.2	Barley	plastid	47.64	47.28
VIT_11s0103g00050.t01	Wine grape	plasma membrane	19.47	46.4
VIT_11s0103g00140.t01	Wine grape	plastid	44.42	43.52
VIT_11s0103g00150.t01	Wine grape	plasma membrane	44.99	43.19
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	31.76	42.97
AT4G10310.1	Thale cress	plasma membrane	40.83	42.69
KRH74148	Soybean	plasma membrane	41.78	42.18
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	39.89	42.12
VIT_11s0103g00130.t01	Wine grape	plasma membrane	43.86	41.73
CDY25243	Canola	mitochondrion, plasma membrane	39.13	40.83
Bra033189.1-P	Field mustard	mitochondrion, plasma membrane	39.13	40.83
KRH25841	Soybean	plasma membrane	43.29	40.75
Bra037912.1-P	Field mustard	plasma membrane	38.19	40.73
CDX86865	Canola	plasma membrane	37.81	40.32
KRH55676	Soybean	mitochondrion, plasma membrane	43.48	40.07
CDX94264	Canola	mitochondrion, plasma membrane	38.37	40.04
Zm00001d040627_P001	Maize	plasma membrane	40.45	40.0
CDX86866	Canola	mitochondrion, plasma membrane	38.0	39.18
Bra037910.1-P	Field mustard	mitochondrion, plasma membrane	37.81	38.99
CDX99535	Canola	mitochondrion, plasma membrane	38.0	38.29
CDY05096	Canola	plasma membrane	31.19	37.08
KRH49067	Soybean	plasma membrane	28.73	37.07
Solyc07g014690.2.1	Tomato	plasma membrane	38.75	36.94
CDX99538	Canola	plasma membrane	36.86	36.59
Zm00001d014680_P001	Maize	plasma membrane, plastid	37.81	36.04
CDX90754	Canola	plastid	38.75	35.04
Bra000707.1-P	Field mustard	plastid	38.56	34.87

Protein Annotations

MapMan:24.2.20	UniProt:A0A1D6E031	InterPro:Cat_transpt	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:0098655	ProteinID:ONM14108.1	PFAM:PF02386	PANTHER:PTHR31064	PANTHER:PTHR31064:SF7
TMHMM:TMhelix	UniParc:UPI00084508D7	EnsemblPlantsGene:Zm00001d002378	EnsemblPlants:Zm00001d002378_P001	EnsemblPlants:Zm00001d002378_T001	SEG:seg

Description

Sodium transporter HKT1

Coordinates

chr2:+:11470204..11474115

Molecular Weight (calculated)

58298.2 Da

IEP (calculated)

9.810

GRAVY (calculated)

0.288

Length

529 amino acids

Sequence
(BLAST)

001: MSLVCSVSKA YAHHQVTERV ARSRRALRCS ASQVWRRAAA ARLSSLLVHV VYFVAMSCAG WGLLVALKVR APNRRPRGID MFFTAVSAST VSSMSTVEME
101: VFSSGQLLVL TALMFGGGEV FVSLVGLASK WSKMRKQIKN RSRRVESHDG DIELETTGDD ADADSRSITS TVTEENDDIP LDAKILRRNA VRSLFFIVLA
201: ILVVVHTVGT VAVAAYVYAA PGARQTLRRK ALNVWIFSVF TTVSTFSSCG FMPTNENMMV FSRDVPLQLL LVPQALVGNT LFPPVLSACV WAAAAATRRE
301: EVVEIARKGR EAMGYYHLFP ARRCWMLAGT VVCFLAVQVA LVCAMEWGGA LRGLSAGEKV SNALFLAVNS RHTGESTLDL STLAAAILVL FVLMMYLPPY
401: TTWFPFEEDS KREHSTEDQL RSTILSQLSY LAIFVIAICI TERRKLKEDP LNFNVLSIVV EVVSAYGNVG FSMGYSCSRQ INPDGLCADR WTGFAGRWSD
501: SGKLILIVVM FFGRLKKFSL KGGKAWKLN

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.