CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86866	Canola	mitochondrion, plasma membrane	92.19	94.35
Bra037910.1-P	Field mustard	mitochondrion, plasma membrane	92.0	94.15
CDX86865	Canola	plasma membrane	72.76	77.02
AT4G10310.1	Thale cress	plasma membrane	70.48	73.12
CDY05096	Canola	plasma membrane	59.62	70.34
CDY25243	Canola	mitochondrion, plasma membrane	67.81	70.22
CDX94264	Canola	mitochondrion, plasma membrane	67.24	69.63
CDX99538	Canola	plasma membrane	68.38	67.35
CDX90754	Canola	plastid	66.29	59.49
PGSC0003DMT400077052	Potato	endoplasmic reticulum, vacuole	44.76	46.91
KRH49067	Soybean	plasma membrane	36.38	46.59
KRH74148	Soybean	plasma membrane	46.29	46.37
Solyc07g014680.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	33.52	45.01
GSMUA_Achr1P23670_001	Banana	plasma membrane, plastid, vacuole	39.24	44.69
VIT_11s0103g00050.t01	Wine grape	plasma membrane	18.86	44.59
KRH25841	Soybean	plasma membrane	47.43	44.31
TraesCS4B01G376000.1	Wheat	plasma membrane	41.33	43.06
TraesCS4B01G370800.1	Wheat	plasma membrane	42.29	42.86
TraesCS4D01G361300.1	Wheat	plasma membrane	41.9	42.64
KRH55676	Soybean	mitochondrion, plasma membrane	46.48	42.51
Solyc07g014690.2.1	Tomato	plasma membrane	44.57	42.16
OQU82274	Sorghum	plasma membrane	35.24	41.86
GSMUA_Achr1P23660_001	Banana	plasma membrane	36.0	41.72
Os04t0607600-01	Rice	plasma membrane	39.05	41.0
HORVU4Hr1G087960.1	Barley	golgi, plasma membrane, plastid	40.19	40.66
TraesCS2D01G428400.1	Wheat	vacuole	34.29	40.45
TraesCS2D01G428300.1	Wheat	plasma membrane	34.1	40.41
EES02854	Sorghum	plasma membrane	40.57	39.01
Os01t0307500-01	Rice	nucleus, peroxisome, plasma membrane	40.57	38.45
Zm00001d040627_P001	Maize	plasma membrane	39.05	38.32
Zm00001d002378_P001	Maize	plastid	38.29	38.0
TraesCS2B01G451800.1	Wheat	plastid	38.67	36.51
TraesCS2D01G428200.1	Wheat	mitochondrion	38.48	35.88
TraesCS2B01G451300.1	Wheat	mitochondrion	38.1	35.52
TraesCS2B01G451400.1	Wheat	plastid	38.86	35.29
TraesCS2A01G430600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	39.05	35.22
HORVU2Hr1G100450.3	Barley	plastid	38.29	34.54
TraesCS2B01G451600.1	Wheat	plasma membrane, plastid	37.71	33.56
HORVU2Hr1G100420.2	Barley	plastid	28.38	27.95

Protein Annotations

EnsemblPlants:CDX99535	EnsemblPlantsGene:GSBRNA2T00107953001	GO:A0A078EBV7	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0055085	InterPro:Cat_transpt	PANTHER:PTHR31064
PANTHER:PTHR31064:SF20	PFAM:PF02386	ProteinID:CDX99535	ProteinID:CDX99535.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDBFF1	MapMan:24.2.20	:	:	:	:

Description

BnaC09g24570D

Coordinates

chrLK031911:+:548441..553506

Molecular Weight (calculated)

60235.9 Da

IEP (calculated)

9.926

GRAVY (calculated)

0.232

Length

525 amino acids

Sequence
(BLAST)

001: MERVLAKLAK IRLQLANFRS PFFIYFFYFF SFSLLGFLAL KVSKPRTTSR PHDLDLFFTS VSAITVSSMS TIDMEVFSNT QLIIITVLMF LGGEVFTSFL
101: DLYFSHFSNF VFPHNKIRHL MGSLNIKPPT EDRRRDLENI TDHLKRPSQI NERASKYLYS VVLGYHLVTN LAGSVLVLVY VTFVKTAKVV LSSKEISPVT
201: FSIFTTVSTF GNCGFVPTKE NMVIFRKNSG LLWLLIPQVF MGNTLFPCFL FLLIWGLDKI TKREEFGYIL KNHKTMGYSH LLSLRLCALL GLTVLGFAMI
301: QFFVFCTFEW NSVSLEGMNP YEKLVGSLFQ VVNSRHTGEN IVDLSTLSPA ILWNKLFLAM NFNTFSLKRK KCDSLFYYSS TYLPPYTLFM PLTTIEKYKE
401: EVESHTGNEG KRKKTGFFVS QLSFLAICVF FISITESQNL RRDPLNFNIL NITLEVISAF GNVGFTTGYS CERRLDINNG SCKDTSYGFV GRWSPNGKFI
501: LIILMFYGRF KQFTAKSGRP WILYP

Best Arabidopsis Sequence Match ( AT4G10310.1 )
(BLAST)

001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS

Arabidopsis Description

HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.