Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G211900.1 | Wheat | endoplasmic reticulum, golgi, plastid | 93.98 | 97.99 |
| TraesCS7A01G312200.1 | Wheat | cytosol | 76.87 | 95.22 |
| HORVU7Hr1G074530.9 | Barley | plastid | 91.81 | 92.7 |
| OQU79823 | Sorghum | golgi | 78.8 | 79.95 |
| Zm00001d049630_P001 | Maize | golgi | 79.04 | 79.23 |
| Os08t0128000-01 | Rice | golgi | 76.87 | 77.8 |
| TraesCS2D01G344500.1 | Wheat | golgi | 67.23 | 67.23 |
| GSMUA_Achr11P... | Banana | golgi | 68.19 | 66.59 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 66.99 | 64.95 |
| CDY06408 | Canola | cytosol | 8.19 | 47.22 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G308600.1 | EnsemblPlantsGene:TraesCS7D01G308600 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF137 | PFAM:PF01344 |
| PFAM:PF13418 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr7D:-:390929962..390932904
Molecular Weight (calculated)
46185.5 Da
IEP (calculated)
9.725
GRAVY (calculated)
-0.332
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPAPPTTS SKPPLPPRLA VPLALALLLA LAFVVDFLSY SSAISPAFSP SSKTVKEGNN NDDTKLRNGS PTVRHLNATF SDLPAPHWDW EEMPPAPVPR
101: LDGASVQIGD LLYVVAGYGS LDHVHSHVDV YNFTSNTWTG RFDMPKKMSN SHLGMASDGR YIYAVSGQFG PQCRPAVSRN FVLDTKLRKW DELPPLPVPR
201: YAPATQLWRG RLHVMGGGKE DRHEPGLEHW SLAVKNGKAL ENEWRAEIPI PRGGPHRACV VANDKLFVIG GQEGDFMPKP GSPIFKCARR HEVVYGDVYM
301: LDNEAKWKQL SPMPKPDSHI EFAWVVVNNS IVIVGGTTEK HPITKKMILV GEVFRFDLET LKWSVIGRMP FRIKTALAGY WDGWLYFTSG QRDRGPDNPT
401: PKKVVGSMWR TKLHV
101: LDGASVQIGD LLYVVAGYGS LDHVHSHVDV YNFTSNTWTG RFDMPKKMSN SHLGMASDGR YIYAVSGQFG PQCRPAVSRN FVLDTKLRKW DELPPLPVPR
201: YAPATQLWRG RLHVMGGGKE DRHEPGLEHW SLAVKNGKAL ENEWRAEIPI PRGGPHRACV VANDKLFVIG GQEGDFMPKP GSPIFKCARR HEVVYGDVYM
301: LDNEAKWKQL SPMPKPDSHI EFAWVVVNNS IVIVGGTTEK HPITKKMILV GEVFRFDLET LKWSVIGRMP FRIKTALAGY WDGWLYFTSG QRDRGPDNPT
401: PKKVVGSMWR TKLHV
001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
Arabidopsis Description
At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.