CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21813	Canola	mitochondrion	34.72	24.27
CDY27540	Canola	extracellular, golgi	59.72	10.49
CDY37314	Canola	extracellular, golgi	59.72	10.49
CDX82217	Canola	golgi	59.72	10.31
CDY32405	Canola	golgi	58.33	10.02
TraesCS7A01G312200.1	Wheat	cytosol	44.44	9.55
Os08t0128000-01	Rice	golgi	48.61	8.54
HORVU7Hr1G074530.9	Barley	plastid	48.61	8.52
Zm00001d049630_P001	Maize	golgi	48.61	8.45
TraesCS7D01G308600.1	Wheat	endoplasmic reticulum, golgi, plastid	47.22	8.19
OQU79823	Sorghum	golgi	45.83	8.07
GSMUA_Achr11P...	Banana	golgi	47.22	8.0
CDY13692	Canola	endoplasmic reticulum, golgi	45.83	7.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	45.83	7.71
CDX83669	Canola	endoplasmic reticulum, golgi	44.44	7.51
CDY13125	Canola	cytosol	31.94	6.18
TraesCS7B01G211900.1	Wheat	endoplasmic reticulum, golgi, plastid	30.56	5.53

Protein Annotations

EnsemblPlants:CDY06408

EnsemblPlantsGene:GSBRNA2T00122389001

ProteinID:CDY06408

ProteinID:CDY06408.1

UniParc:UPI0004EE89A3

MapMan:35.2

Description

BnaC05g31220D

Coordinates

chrLK031969:+:420285..420503

Molecular Weight (calculated)

8323.0 Da

IEP (calculated)

7.807

GRAVY (calculated)

-0.822

Length

72 amino acids

Sequence
(BLAST)

1: MLQLLKENRH TQELEHWSIA MKDGKALEKW RSEIPIPRGG PHRLIFTALM NAVAANPNSR DVENQTDNES MR

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.