Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY37314 | Canola | extracellular, golgi | 98.54 | 98.54 |
CDX82217 | Canola | golgi | 92.68 | 91.13 |
CDY32405 | Canola | golgi | 90.73 | 88.78 |
AT1G51540.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 87.56 | 86.51 |
PGSC0003DMT400023756 | Potato | cytosol | 55.61 | 84.76 |
PGSC0003DMT400068730 | Potato | cytosol | 11.46 | 77.05 |
KRH44609 | Soybean | nucleus | 75.37 | 75.37 |
VIT_09s0054g00620.t01 | Wine grape | golgi | 76.83 | 73.94 |
Solyc03g123910.2.1 | Tomato | extracellular | 73.66 | 73.84 |
Os04t0487100-01 | Rice | mitochondrion | 72.93 | 71.19 |
EES11025 | Sorghum | golgi | 71.46 | 70.43 |
TraesCS2A01G345800.1 | Wheat | golgi | 70.98 | 69.95 |
TraesCS2D01G344500.1 | Wheat | golgi | 70.73 | 69.88 |
TraesCS2B01G364200.1 | Wheat | golgi | 70.49 | 69.64 |
HORVU2Hr1G084190.4 | Barley | golgi | 70.49 | 69.3 |
CDY13125 | Canola | cytosol | 56.59 | 62.37 |
CDY13692 | Canola | endoplasmic reticulum, golgi | 62.93 | 60.85 |
CDX83669 | Canola | endoplasmic reticulum, golgi | 62.68 | 60.33 |
CDY06408 | Canola | cytosol | 10.49 | 59.72 |
Zm00001d003246_P001 | Maize | golgi | 69.02 | 59.08 |
CDY21813 | Canola | mitochondrion | 13.41 | 53.4 |
GSMUA_Achr6P28410_001 | Banana | nucleus | 72.44 | 37.59 |
Protein Annotations
Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078GLW5 | EnsemblPlants:CDY27540 | ProteinID:CDY27540 | ProteinID:CDY27540.1 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00038224001 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
InterPro:Kelch_1 | PFAM:PF01344 | PFAM:PF13418 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF137 | SUPFAM:SSF117281 |
TMHMM:TMhelix | UniParc:UPI0004EE57B6 | SEG:seg | : | : | : |
Description
BnaC01g32230DBnaC01g32230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLW5]
Coordinates
chrLK032206:-:82001..84055
Molecular Weight (calculated)
46318.1 Da
IEP (calculated)
9.528
GRAVY (calculated)
-0.314
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MARQAGKQSY GRLVLVSCLA LLAVGLIADF LWASSHRFSP AGTYLPSSLI EKLPPESNEK DTKTKERKLS ATFQDLDAPQ LQWEKMAAAP VPRLDGAAIQ
101: IRNLLYVFAG YGNINLVHSH VDIYNFVDNK WGGRFDMPKE MAHSHLGMVT DGRYIYIVTG QYGPQCRGPT AKTFVLDTDT NTWSDFIPLP VPRYAPATQL
201: WRGRLHVMGG SKENRHTPGL EHWSIAVKDG KALEKEWRSE IPIPRGGPHR ACVVVDDRLF VIGGQEGDFM AKPGSPIFKC SRRLEVVFSD VYMLDEDMKW
301: KVMPPMPKPD SHIEFAWKVV NNSIVIVGGT TEKHPETKKM VLVGEIFQFN LNTMKWYVIG KLPYRVKTTL VGYWDGQLYF TSGQRDKGPD DPAPRKVIAE
401: MWRTKLILNP
101: IRNLLYVFAG YGNINLVHSH VDIYNFVDNK WGGRFDMPKE MAHSHLGMVT DGRYIYIVTG QYGPQCRGPT AKTFVLDTDT NTWSDFIPLP VPRYAPATQL
201: WRGRLHVMGG SKENRHTPGL EHWSIAVKDG KALEKEWRSE IPIPRGGPHR ACVVVDDRLF VIGGQEGDFM AKPGSPIFKC SRRLEVVFSD VYMLDEDMKW
301: KVMPPMPKPD SHIEFAWKVV NNSIVIVGGT TEKHPETKKM VLVGEIFQFN LNTMKWYVIG KLPYRVKTTL VGYWDGQLYF TSGQRDKGPD DPAPRKVIAE
401: MWRTKLILNP
001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
Arabidopsis Description
At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.