Factsheet for TraesCS2D01G344500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G345800.1	Wheat	golgi	96.14	95.91
TraesCS2B01G364200.1	Wheat	golgi	94.94	94.94
HORVU2Hr1G084190.4	Barley	golgi	94.7	94.24
Os04t0487100-01	Rice	mitochondrion	86.99	85.95
EES11025	Sorghum	golgi	84.82	84.62
PGSC0003DMT400068730	Potato	cytosol	12.29	83.61
PGSC0003DMT400023756	Potato	cytosol	52.05	80.3
KRH44609	Soybean	nucleus	72.29	73.17
CDY37314	Canola	extracellular, golgi	70.12	70.98
Zm00001d003246_P001	Maize	golgi	81.69	70.77
CDY27540	Canola	extracellular, golgi	69.88	70.73
VIT_09s0054g00620.t01	Wine grape	golgi	72.29	70.42
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	71.57	70.21
Bra023903.1-P	Field mustard	extracellular, golgi	69.16	70.0
Solyc03g123910.2.1	Tomato	extracellular	68.67	69.68
CDX82217	Canola	golgi	69.4	69.06
CDY32405	Canola	golgi	69.64	68.97
Bra001812.1-P	Field mustard	golgi	68.92	68.59
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	67.95	67.95
TraesCS7D01G308600.1	Wheat	endoplasmic reticulum, golgi, plastid	67.23	67.23
Solyc02g093910.2.1	Tomato	extracellular, golgi	62.41	62.11
PGSC0003DMT400052239	Potato	extracellular, golgi	62.65	62.05
KRH07016	Soybean	endoplasmic reticulum, golgi	64.1	61.29
CDY13692	Canola	endoplasmic reticulum, golgi	61.93	60.61
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	60.72	59.43
CDX83669	Canola	endoplasmic reticulum, golgi	60.72	59.15
KRG94441	Soybean	plastid	63.61	58.8
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	60.24	58.69
CDY21813	Canola	mitochondrion	12.53	50.49
CDY13125	Canola	cytosol	41.45	46.24
GSMUA_Achr6P28410_001	Banana	nucleus	80.48	42.28
Bra027529.1-P	Field mustard	cytosol	28.92	37.15

Protein Annotations

EnsemblPlants:TraesCS2D01G344500.1	EnsemblPlantsGene:TraesCS2D01G344500	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF224	PFAM:PF01344
PFAM:PF13418	SEG:seg	SUPFAM:SSF117281	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr2D:+:440608180..440611678

Molecular Weight (calculated)

46509.1 Da

IEP (calculated)

9.347

GRAVY (calculated)

-0.335

Length

415 amino acids

Sequence
(BLAST)

001: MARPAVKALP PKHLVALAVV AILGLFLVAD YLWASSRSAA PSIWPSRLDI STRPTASPPP SEKQTKGNTS TGSMDISATF ADLPAPELQW KQMAEAPVPR
101: LDGAAIQIKN LLFVFAGYGT INYVHSHVDI YNFSDNTWGG KFDMPKEMAH SHLGMVTDGR YIYVVTGQYG PQCRGPTARN FVLDTERKEW HDLPPLPVPR
201: YAPATQLWRG RLHVMGGSKE DRHEPGLEHW SLAVKDGKAL EQEWRSEIPI PRGGPHRACV VANDKLLVIG GQEGDFMAKP GSPIFKCVRR SEMVYSDVYM
301: LDDEMKWKEL PPMPKPDSHI EFAWTNVNNS IIIAGGTTEK HPINKRMTLV GEVFRFNLET LEWSVIGRLP FRIKTTLVGY WDGWLYFTSG QRDKGPSNPS
401: PKKVVGCMWR TKLHL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.