CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13692	Canola	endoplasmic reticulum, golgi	88.73	89.15
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	88.5	88.92
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	85.68	85.68
CDY21813	Canola	mitochondrion	16.2	66.99
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	62.44	62.88
CDY27540	Canola	extracellular, golgi	60.33	62.68
CDX82217	Canola	golgi	61.03	62.35
CDY37314	Canola	extracellular, golgi	59.86	62.2
CDY32405	Canola	golgi	60.8	61.81
EES11025	Sorghum	golgi	60.33	61.78
TraesCS2D01G344500.1	Wheat	golgi	59.15	60.72
TraesCS2B01G364200.1	Wheat	golgi	59.15	60.72
Os04t0487100-01	Rice	mitochondrion	59.62	60.48
Solyc02g093910.2.1	Tomato	extracellular, golgi	59.15	60.43
TraesCS2A01G345800.1	Wheat	golgi	58.92	60.34
PGSC0003DMT400052239	Potato	extracellular, golgi	59.15	60.14
HORVU2Hr1G084190.4	Barley	golgi	58.22	59.47
KRH07016	Soybean	endoplasmic reticulum, golgi	60.09	58.99
KRG94441	Soybean	plastid	60.33	57.24
Zm00001d003246_P001	Maize	golgi	59.15	52.61
CDY06408	Canola	cytosol	7.51	44.44
CDY13125	Canola	cytosol	35.68	40.86
GSMUA_Achr6P28410_001	Banana	nucleus	59.86	32.28

Protein Annotations

EnsemblPlants:CDX83669	EnsemblPlantsGene:GSBRNA2T00139369001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	PFAM:PF13418	ProteinID:CDX83669
ProteinID:CDX83669.1	SEG:seg	SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI0004EE9C25	MapMan:35.1

Description

BnaC07g24090D

Coordinates

chrLK031833:-:1514631..1516832

Molecular Weight (calculated)

48021.7 Da

IEP (calculated)

9.862

GRAVY (calculated)

-0.349

Length

426 amino acids

Sequence
(BLAST)

001: MANKPDHHHR SSRRLMLVLY STCVLGIGFA AALLCLSSTK LSLSSVSSIW VPENPPEIQA PSIDSRIVQK RSKQSNKTKD DHANVRLLSA TFADLPAPEL
101: HWEQMTSAPV PRLDGYSVQI KNLLYVFSGY GSLDYVHSHV DVFNFTDNKW CDSFDTPKEM ANSHLGIVTD GRYVYVVSGQ FGPQCRGPTS RSFVLDSTTK
201: TWLDFPSLPA PRYAPATQIW RGRLHVMGGS KENRNAVAHD HWSIAVKGGK ALDKWREEVP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PNSPIFKCSR
301: RREFFNGEVY MMDEGMRWKM LPPMPKNNSH IESAWIIVNN SIVIVGGTTD WHPVTKRLVL VGEIFRFQLD TLTWSVIGRL PYRVKTAMAG YWNGYLYFTS
401: GQRDRGPDNP QPGKVIGEMW RTKLKF

Best Arabidopsis Sequence Match ( AT3G27220.1 )
(BLAST)

001: MANKPDHHHH HHQSSRRLML VLYFTSVLGI GFIAAFLCLS SSIPSVSAVF SIWVPVNRPE IQIPIIDSKI VQKRSKQSND TKDHVRFLSA IFADIPAPEL
101: KWEEMESAPV PRLDGYSVQI NNLLYVFSGY GSLDYVHSHV DVFNFTDNKW CDRFHTPKEM ANSHLGIVTD GRYVYVVSGQ LGPQCRGPTS RSFVLDSFTK
201: TWLEFPSLPA PRYAPATQIW RGRLHVMGGS KENRNAVAFD HWSIAVKDGK ALDEWREEVP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PNSPIFKCSR
301: RREIFNGEVY MMDEEMKWKM LPPMPKNNSH IESAWIIVNN SIVIVGGTTD WHPVTKRLVL VGEIFRFQLD TLTWSVIGRL PYRVKTAMAG FWNGYLYFTS
401: GQRDRGPDNP QPGKVIGEMW RTKLKF

Arabidopsis Description

Kelch repeat-containing protein At3g27220 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK31]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.