Factsheet for PGSC0003DMT400052239

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093910.2.1	Tomato	extracellular, golgi	95.7	96.16
PGSC0003DMT400023756	Potato	cytosol	48.21	75.09
PGSC0003DMT400068730	Potato	cytosol	10.26	70.49
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	70.17	69.5
KRH07016	Soybean	endoplasmic reticulum, golgi	68.5	66.13
EES11025	Sorghum	golgi	63.01	63.46
KRG94441	Soybean	plastid	67.78	63.25
TraesCS2D01G344500.1	Wheat	golgi	62.05	62.65
TraesCS2A01G345800.1	Wheat	golgi	61.81	62.26
Os04t0487100-01	Rice	mitochondrion	62.29	62.14
TraesCS2B01G364200.1	Wheat	golgi	61.34	61.93
HORVU2Hr1G084190.4	Barley	golgi	61.58	61.87
CDY13692	Canola	endoplasmic reticulum, golgi	60.38	59.67
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	60.62	59.62
CDX83669	Canola	endoplasmic reticulum, golgi	60.14	59.15
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	59.43	58.73
Zm00001d003246_P001	Maize	golgi	60.38	52.82
CDY21813	Canola	mitochondrion	12.65	51.46
GSMUA_Achr6P28410_001	Banana	nucleus	62.29	33.04

Protein Annotations

EntrezGene:102598419	Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0005802	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009061	GO:GO:0009987
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M1BT22	PFAM:PF13418	PFAM:PF13964
EnsemblPlantsGene:PGSC0003DMG400020264	PGSC:PGSC0003DMG400020264	EnsemblPlants:PGSC0003DMT400052239	PANTHER:PTHR24413	PANTHER:PTHR24413:SF111	SMART:SM00612
SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI000296C510	RefSeq:XP_006338676.1	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020264]

Coordinates

chr2:+:47812513..47815262

Molecular Weight (calculated)

47003.4 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.307

Length

419 amino acids

Sequence
(BLAST)

001: MIRSTAKHSF AKPIILLLAF VALLAISLTR DFHSASSSAY VSLATTWAPD KYRINVSNHS LKNQDAGGSN RDRYPERALA MTYADLPAPE LKWEQMASAP
101: VVRLDGYSLQ IKDLLFVFAG YENLDHVHSH VDVFNFTTNT WTESFAIPKD MAHSHLGVAT DGRYIYIVSG QYGPQCRGPT ANTFVLDTHT RKWESLPPLP
201: APRYAPATQL WKGRLHVMGG GKENRHTPGL DHWSLAVANG KALEKHWRKE VPIPRGGPHR ACIAVGDQLY VIGGQEGDFM AKPGSPIFKC SRRFEVVFGD
301: VYMLDESMKW KGLPSMPKPV SHIECSWVIV NNSIVIVGGT TEKHPVTKRM ILVGEVFQFN LNTLTWSVIG KMPYRAKTTQ AGFWDGWLYF TSGQRDRGPD
401: NPQPRKVVGD TWRTKLRLQ

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.