Factsheet for Solyc02g093910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052239	Potato	extracellular, golgi	96.16	95.7
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	70.98	69.98
KRH07016	Soybean	endoplasmic reticulum, golgi	69.06	66.36
Solyc03g123910.2.1	Tomato	extracellular	64.03	65.28
EES11025	Sorghum	golgi	63.07	63.22
KRG94441	Soybean	plastid	67.39	62.58
TraesCS2D01G344500.1	Wheat	golgi	62.11	62.41
TraesCS2A01G345800.1	Wheat	golgi	62.11	62.26
TraesCS2B01G364200.1	Wheat	golgi	61.87	62.17
Os04t0487100-01	Rice	mitochondrion	62.59	62.14
HORVU2Hr1G084190.4	Barley	golgi	62.11	62.11
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	61.15	59.86
CDY13692	Canola	endoplasmic reticulum, golgi	60.43	59.43
CDX83669	Canola	endoplasmic reticulum, golgi	60.43	59.15
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	59.47	58.49
Zm00001d003246_P001	Maize	golgi	60.43	52.61
CDY21813	Canola	mitochondrion	12.71	51.46
GSMUA_Achr6P28410_001	Banana	nucleus	62.59	33.04

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009061
GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787
GO:GO:0043161	InterPro:IPR015915	UniProt:K4BDI7	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344
PFAM:PF13418	PFAM:PF13964	PANTHER:PTHR24413	PANTHER:PTHR24413:SF111	SMART:SM00612	SUPFAM:SSF117281
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc02g093910.2	EnsemblPlants:Solyc02g093910.2.1	TMHMM:TMhelix	UniParc:UPI00027688CA	SEG:seg

Description

No Description!

Coordinates

chr2:+:54605740..54608601

Molecular Weight (calculated)

46760.1 Da

IEP (calculated)

9.868

GRAVY (calculated)

-0.315

Length

417 amino acids

Sequence
(BLAST)

001: MIRSTAKHSF AKPIILLLAF VALLAISLTR DFHSASSSAY VSLATTWAPD KYRINVSNQN QDVGGGSNKD RYPERALSMT YADLPAPELK WEQMASAPVV
101: RLDGYSLQIK DLLFVFAGYE NLDHVHSHVD VYNFTSNTWT ESFAIPKDMA NSHLGVATDG RYIYIVSGQY GPQCRGPTAK TFVLDTHTRK WESLPPLPAP
201: RYAPATQLWK GRLHVMGGGK ENRHTPGLDH WSLAVANGKA LEKHWRKEVP IPRGGPHRAC IAVGDQLYVI GGQEGDFMAK PGSPIFKCSR RFEVVFGDVY
301: MLDESMKWKQ LPSMPKPVSH IECSWVIVNN SIVIVGGTTE KHPVTKRMIL VGEVFQFNLN TLTWSAIGKM PYRAKTTQAG FWDGWLYFTS GQRDRGPDNP
401: QPRKVVGDTW RTKLRLL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.