CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	95.52	95.52
CDX83669	Canola	endoplasmic reticulum, golgi	89.15	88.73
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	85.38	84.98
CDY21813	Canola	mitochondrion	16.51	67.96
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	63.21	63.36
CDY27540	Canola	extracellular, golgi	60.85	62.93
CDY37314	Canola	extracellular, golgi	60.61	62.68
CDX82217	Canola	golgi	61.56	62.59
TraesCS2B01G364200.1	Wheat	golgi	60.61	61.93
TraesCS2D01G344500.1	Wheat	golgi	60.61	61.93
TraesCS2A01G345800.1	Wheat	golgi	60.61	61.78
CDY32405	Canola	golgi	60.85	61.58
Os04t0487100-01	Rice	mitochondrion	60.85	61.43
HORVU2Hr1G084190.4	Barley	golgi	59.91	60.91
EES11025	Sorghum	golgi	59.43	60.58
Solyc02g093910.2.1	Tomato	extracellular, golgi	59.43	60.43
PGSC0003DMT400052239	Potato	extracellular, golgi	59.67	60.38
KRH07016	Soybean	endoplasmic reticulum, golgi	60.85	59.45
KRG94441	Soybean	plastid	60.85	57.46
Zm00001d003246_P001	Maize	golgi	58.73	51.98
CDY06408	Canola	cytosol	7.78	45.83
CDY13125	Canola	cytosol	36.56	41.67
GSMUA_Achr6P28410_001	Banana	nucleus	61.32	32.91

Protein Annotations

EnsemblPlants:CDY13692	EnsemblPlantsGene:GSBRNA2T00078117001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	PFAM:PF13418	ProteinID:CDY13692
ProteinID:CDY13692.1	SEG:seg	SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI0004EE9304	UniProt:A0A078FL23
MapMan:35.1	:	:	:	:	:

Description

BnaA06g32310DBnaA06g32310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL23]

Coordinates

chrLK032037:-:610861..612856

Molecular Weight (calculated)

48159.7 Da

IEP (calculated)

9.498

GRAVY (calculated)

-0.366

Length

424 amino acids

Sequence
(BLAST)

001: MANKPDHHHH RTSRRLMLVL YFTCLLVAAF LCLSSTKLSL SSVSSIWVPE NPPEIQAPSI DSRIVQKRSK QSNETKDDHV NNIRLLSATF ADLPAPELQW
101: EQMTSAPVPR LDGYSVQIKN LLYVFSGYGS LDYVHSHVDV FNFTDNTWCD RFDTPKEMAN SHLGIVTDGR YVYVVSGQFG PQCRGPTSRS FVLDSATKTW
201: LQFPSLPAPR YAPATQIWRG RLHVMGGSKE NRNAVASDHW SIAVKDGKAL DQWREEVPIP RGGPHRACVV ANDKLLVIGG QEGDFMAKPN SPIFKCSRRR
301: EFFNGEVYMM DEEMKWKMLP PMPKNNSHIE SAWIIVNNSI VIVGGTTDWH PVTKRLVLVG EIFRFQLDTL TWSVIGRLPY RVKTAMAGYW NGYLYFTSGQ
401: RDRGPDNPQP GKVIGEMWRT KLKF

Best Arabidopsis Sequence Match ( AT3G27220.1 )
(BLAST)

001: MANKPDHHHH HHQSSRRLML VLYFTSVLGI GFIAAFLCLS SSIPSVSAVF SIWVPVNRPE IQIPIIDSKI VQKRSKQSND TKDHVRFLSA IFADIPAPEL
101: KWEEMESAPV PRLDGYSVQI NNLLYVFSGY GSLDYVHSHV DVFNFTDNKW CDRFHTPKEM ANSHLGIVTD GRYVYVVSGQ LGPQCRGPTS RSFVLDSFTK
201: TWLEFPSLPA PRYAPATQIW RGRLHVMGGS KENRNAVAFD HWSIAVKDGK ALDEWREEVP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PNSPIFKCSR
301: RREIFNGEVY MMDEEMKWKM LPPMPKNNSH IESAWIIVNN SIVIVGGTTD WHPVTKRLVL VGEIFRFQLD TLTWSVIGRL PYRVKTAMAG FWNGYLYFTS
401: GQRDRGPDNP QPGKVIGEMW RTKLKF

Arabidopsis Description

Kelch repeat-containing protein At3g27220 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK31]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.