CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
extracellular 4
golgi 6
plasma membrane 4
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001812.1-P	Field mustard	golgi	98.32	98.32
CDY32405	Canola	golgi	95.68	95.23
CDY27540	Canola	extracellular, golgi	91.13	92.68
CDY37314	Canola	extracellular, golgi	90.65	92.2
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	83.69	84.1
PGSC0003DMT400023756	Potato	cytosol	53.72	83.27
PGSC0003DMT400068730	Potato	cytosol	11.03	75.41
KRH44609	Soybean	nucleus	73.14	74.39
VIT_09s0054g00620.t01	Wine grape	golgi	75.3	73.71
Solyc03g123910.2.1	Tomato	extracellular	71.46	72.86
EES11025	Sorghum	golgi	71.46	71.63
Os04t0487100-01	Rice	mitochondrion	71.94	71.43
HORVU2Hr1G084190.4	Barley	golgi	69.78	69.78
TraesCS2A01G345800.1	Wheat	golgi	69.3	69.47
TraesCS2D01G344500.1	Wheat	golgi	69.06	69.4
TraesCS2B01G364200.1	Wheat	golgi	68.59	68.92
CDY13692	Canola	endoplasmic reticulum, golgi	62.59	61.56
CDX83669	Canola	endoplasmic reticulum, golgi	62.35	61.03
Zm00001d003246_P001	Maize	golgi	69.06	60.13
CDY13125	Canola	cytosol	53.48	59.95
CDY06408	Canola	cytosol	10.31	59.72
CDY21813	Canola	mitochondrion	13.19	53.4
GSMUA_Achr6P28410_001	Banana	nucleus	70.02	36.96

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX82217	ProteinID:CDX82217	ProteinID:CDX82217.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00137311001	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PFAM:PF01344	PFAM:PF13418	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	SUPFAM:SSF117281	TMHMM:TMhelix
UniParc:UPI0004EEE508	SEG:seg	:	:	:	:

Description

BnaA03g36040D

Coordinates

chrLK031828:-:49568..51603

Molecular Weight (calculated)

46977.9 Da

IEP (calculated)

9.923

GRAVY (calculated)

-0.288

Length

417 amino acids

Sequence
(BLAST)

001: MVKPAGKQSC GRLVFASFLA LLAFGLVADF LWASSHRFSS AMISLPSSVI GKLPPSPNEK DTKKKKNDNA LRERKLSATF QDLPAPQLHW EKMSAAPVPR
101: LDGAAIQIRN FLYVFAGYGN INLVHSHVDV YNFVDNTWGG RFDMPKEMAH SHLGMVTDGR FIYIVTGQYG PQCRGPTAKT FVLDTDTNTW SDFIPLPVPR
201: YAPATQLWRG RLHVMGGSKE NRHTPGLEHW SIAVKDGKAL EKEWRSEIPI PRGGPHRACV VVDDKLFVIG GQEGDFMAKP GSPIFKCSRR LEVVFSDVYM
301: LDEEMKWKVM PSMPKPDSHI EFAWKVVNNS IVIVGGTTEK HPETKKMVLV GEIFQFNLNT MKWYVIGKLP YRVKTTLVGY WDGNLYFTSG QRDKGPDDPA
401: PRKVIAEMWR TKLILNP

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.