CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
extracellular 4
golgi 6
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023756	Potato	cytosol	57.8	88.1
PGSC0003DMT400068730	Potato	cytosol	12.44	83.61
Solyc03g123910.2.1	Tomato	extracellular	75.61	75.79
CDY27540	Canola	extracellular, golgi	75.37	75.37
VIT_09s0054g00620.t01	Wine grape	golgi	78.29	75.35
CDY37314	Canola	extracellular, golgi	74.15	74.15
Bra023903.1-P	Field mustard	extracellular, golgi	73.66	73.66
CDX82217	Canola	golgi	74.39	73.14
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	73.9	73.01
Bra001812.1-P	Field mustard	golgi	73.9	72.66
CDY32405	Canola	golgi	74.15	72.55
TraesCS2D01G344500.1	Wheat	golgi	73.17	72.29
EES11025	Sorghum	golgi	72.93	71.88
Os04t0487100-01	Rice	mitochondrion	73.17	71.43
HORVU2Hr1G084190.4	Barley	golgi	72.44	71.22
TraesCS2A01G345800.1	Wheat	golgi	72.2	71.15
TraesCS2B01G364200.1	Wheat	golgi	71.46	70.6
KRH07016	Soybean	endoplasmic reticulum, golgi	63.66	60.14
Zm00001d003246_P001	Maize	golgi	70.24	60.13
KRG94441	Soybean	plastid	63.66	58.13
CDY13125	Canola	cytosol	43.17	47.58
Bra027529.1-P	Field mustard	cytosol	30.49	38.7
GSMUA_Achr6P28410_001	Banana	nucleus	72.68	37.72

Protein Annotations

EntrezGene:100809598	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02004943	EnsemblPlantsGene:GLYMA_08G221200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	UniProt:I1KVQ2	InterPro:IPR015915	EnsemblPlants:KRH44609	ProteinID:KRH44609
ProteinID:KRH44609.1	InterPro:Kelch-typ_b-propeller	PFAM:PF13418	PFAM:PF13964	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137
SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI0002339103	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:17966154..17970192

Molecular Weight (calculated)

45930.5 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.280

Length

410 amino acids

Sequence
(BLAST)

001: MMVRASVKVG SAKFVVICVG LLGFALVADF LWASTSSTLP TSTKPSAFVV PSNHNKKKYE NATASGRFLA AAYADLDAPQ LKWQKMAPAP VPRLDGAAIQ
101: IRDLLFVFAG YGTIDFVHSH VDVYNFTDNT WGGRFDMPKE MAHSHLGMVT DGRYIYVVTG QYGPQCRGPT AHNFVLDTQT RKWRDLPPLP VPRYAPATQL
201: WRGRLHVMGG SKENRHTPGL EHWSLAVKDG KALENEWRSE IPIPRGGPHR ACVVVDDRLY VLGGQEGDFM AKPGSPIFKC SRRQEVVYTD VYMLDDDMKW
301: KTLPPMPKAN SHIEFAWALV NNSIVIVGGT TEKHPITKKM VLNGEVVQFN LNTLKWSVIG KLPYRVKTTL VGFWNGWLYF TSGQRDKGPD DPSPKKVIGE
401: MWRTKLKLNE

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.